| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5730 |
|---|
| Symbol | |
|---|
| ID | 7975783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 440864 |
|---|
| End bp | 441232 |
|---|
| Gene Length | 369 bp |
|---|
| Protein Length | 122 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796311 |
|---|
| Product | putative signal peptide protein |
|---|
| Protein accession | YP_002947585 |
|---|
| Protein GI | 239820400 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTA CTCGAACCGT TCTCAAGCTG GCTCTCTCGG GCACGATTGC CGCAGGCGCT
CTTTTCGGCG TGGCCGCCGC AACCGCGGGC ACCAGCTGGT CCATCGGCGT GTCGGTGCCC
GGCGTGGTGG TGAGCGAGCC GGCACCGGTC TACTACGAGC CCGCGCCTGT GTATTCGCGG
CCGGCCCCTG TCTACTACGA GCCGGCGCCG CCGGTGCGCT ATCAGGCGCC CGCCTACGTT
GCACCGGCAC CCGTCTACTA CGAGCCGGGA CCGAGCTGGG AAGAACGCCG CGCAGCGCGC
CATGAATGGC GCCGCCGCGA ATGGGAGCGG CGCGAGCACT ACCGCCACTA TCGCGAAGAC
CGCGACTGA
|
|---|
| Protein sequence | MTFTRTVLKL ALSGTIAAGA LFGVAAATAG TSWSIGVSVP GVVVSEPAPV YYEPAPVYSR
PAPVYYEPAP PVRYQAPAYV APAPVYYEPG PSWEERRAAR HEWRRREWER REHYRHYRED
RD
|
|---|
| |