Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5723 |
Symbol | |
ID | 7975776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 435682 |
End bp | 436689 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644796304 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_002947578 |
Protein GI | 239820393 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGAAAGC TTCATCGCTC GCTGGCAGCC GCCGGCCTGG CCCTCGCATT GGCCGTTCCG GCGCTTGCGC AGGAGGCGCA GGAACGCGTC ATCCGCTTCG GCCACCTCAA CAACGCCGAC CACCCGGTGA GCTTTGGCGT GAAGCGTTTT GCCGAGCTGC TGGCGGCCAA GAGCGGCGGC AAGATGAAGG TGCAGGAATA CCCGGCCTCG CAGCTGGGCA ACGAGATGCA GCAGCAGTCG GCGCTGCAGG GCGGCGTGCA GCAGATGTCG GCGCCGGCCA CCACTTCGCT CGCGGGCATC GTGAAGGAGT TCGGCCTCGT CGACTTTCCG TTCGCGGTCG GCAACTTCGC GCAGGCCGAT GCGCTGCTCG ACGGCCCGCT CGGGCAGGCG CTGGTTGCGA AGCTGCCGGA GAAGGGCCTG GTCGCGCTGG GCTACTGGGA CCTGGGCTTT CGCAACGTCA CCAACAGCAA ACGCCCGATC ACCCGGCCCG AAGACCTGGA GGGCCTGAAG ATCCGCGTCA TTCCCAACCC GGTGTTCCTG GAGACCTTCA AGTCCTTCAA GGCCAACCCG GTGCCGATGC CCTTCGCGGA GCTCTACGGC GCGCTCGAGT CGAAGGCGGT CGACGGCCAG GAGAACCCGT ACTCGGTGAT TCTTTCGAAC AAGTTCTTCG AGGTGCAGAA GTTCGTGAGC GCCACCAACC ACGTGTACGC GGCCAACATC GTCCTGGTCA GCAAGAAGTT CTGGGACACG CTCAATCCCG CCGAGCAGAA GATGATGCGC GAGGCCGCAG ACGAGGCCCG GGGCTACCAG CGCCAGGTGA GCCGCGCCGC CGCGCAGCGC GCCGTGGGCG AGCTCCAGGC CAAGGGCGCG AAGTTCAACG AGGTGGCGCC GGCCGAGCAG GCCCGCATGC GGCAGATTGC GAGGCCCGTC ATCGAGCGCT TCGCCGCGAG CTACGACCCC GCCGTCGTCA AGCTCTACAA CGACGAACTT GCGCGCATCC GCAAATAG
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Protein sequence | MRKLHRSLAA AGLALALAVP ALAQEAQERV IRFGHLNNAD HPVSFGVKRF AELLAAKSGG KMKVQEYPAS QLGNEMQQQS ALQGGVQQMS APATTSLAGI VKEFGLVDFP FAVGNFAQAD ALLDGPLGQA LVAKLPEKGL VALGYWDLGF RNVTNSKRPI TRPEDLEGLK IRVIPNPVFL ETFKSFKANP VPMPFAELYG ALESKAVDGQ ENPYSVILSN KFFEVQKFVS ATNHVYAANI VLVSKKFWDT LNPAEQKMMR EAADEARGYQ RQVSRAAAQR AVGELQAKGA KFNEVAPAEQ ARMRQIARPV IERFAASYDP AVVKLYNDEL ARIRK
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