| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5721 |
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| Symbol | |
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| ID | 7975774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 434168 |
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| End bp | 435181 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796302 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002947576 |
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| Protein GI | 239820391 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGCT CGAAGCAGAA ATGGCTGGCG CTGGCCATCG CGGCCTTCGC CGCATTGGCG
GCGGCCGGTG CCGGCGCGCA GGTCAAGGAA CGCACGCTCA AGTTCGCGTT CCAGAACCAG
ACCGGCCATC CGCAGGCGCA GGGCGCGCAG AAGTTCGCCG ACATCGTCGC GGCCAAGTCC
GGCGGCAAGA TCACGGTCAA GCTGTTTCCG GGCGGCACGC TCGGCGGCGA CCTGCAGACC
GTGTCCGCGC TGCAGGGCGG AACGGTCGAG CTCACGGTGC TCAACGCCGG CATCCTTTCG
GCGCAGGTCA GGGAGTTCGC AGTCTTCGAC TTTCCGTTCC TCTTCAACAG CGGCAAGGAG
GCCGATGCGG TCACCGACGG GCCCTTCGGC CAGAAGCTGA TGGCCAGGCT CGACGACAAG
GGCCTGCACG GCCTTGGCTA CTGGGACCTG GGCTTTCGCA ATCTCACCAA CAGCAAGCGG
CCGATCGCGG CGGCCGACGA CATCGCGGGG CTCAAGATCC GCGTCATTCA ATCGCCGATC
TACATCGACC TGTTCAGCGC GCTGGGCGCC AACCCCGCGC CGCTGCCGTT CCCCGAGCTC
TATCCGGCGC TCGACCAGAA GGCGGTCGAC GGGCAGGAGA ACCCGAACAC CACCATCCTT
GCCTCCAAGT TTGCCGAGGT GCAGAAGTAC ATCACCCAGA CGCGGCACGT CTACAACCCG
CAGGCGCTCC TGGTGAGCAA GAAGACCTGG GACGGCATGA GCGCCGACGA GCGGCAGATC
CTCACCGAGG CCGCGAAGGA TTCGACCGTG TTCCAGCGTG CGGCCTCGCG CAGCGCCGCC
GACAGCGCGC TCGAGGCGCT CAGGAAGGCG GGCATGACCG TCTCGGAACT GCCGCCGGAA
GAAATGGAGA AGCTGCGCGC CAAGGTGAAG CCGGTGATCG ACAAGTATTC CGCATCGGTG
GGCGAGGCCA CGGTCAAGGA ACTGATGTCG GAGATCGCCA AGGTGCGCAA GTAG
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| Protein sequence | MKGSKQKWLA LAIAAFAALA AAGAGAQVKE RTLKFAFQNQ TGHPQAQGAQ KFADIVAAKS
GGKITVKLFP GGTLGGDLQT VSALQGGTVE LTVLNAGILS AQVREFAVFD FPFLFNSGKE
ADAVTDGPFG QKLMARLDDK GLHGLGYWDL GFRNLTNSKR PIAAADDIAG LKIRVIQSPI
YIDLFSALGA NPAPLPFPEL YPALDQKAVD GQENPNTTIL ASKFAEVQKY ITQTRHVYNP
QALLVSKKTW DGMSADERQI LTEAAKDSTV FQRAASRSAA DSALEALRKA GMTVSELPPE
EMEKLRAKVK PVIDKYSASV GEATVKELMS EIAKVRK
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