| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5697 |
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| Symbol | |
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| ID | 7975750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 411379 |
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| End bp | 413142 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796279 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002947553 |
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| Protein GI | 239820368 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCACAG AAGCCGCCCG CCCCAAGACC CTGCAGGAAC TGCGCAGCCA GCGCTGGTTC
GCGAGCGACG ACATCCGCGG CTTCGCGCAC CGCCAGCGCA TGCAGCAGCA GGGGCTCGCG
CGCGAGGAGT TCATGGGCCG GCCGGTCATC GGCATCGTCA ACACCTGGAG CGAGCTCTCG
CCGTGCCACG CGCACCTGCG CGAGCGCGCC GAGTCCGTCA AGCGCGGTGT GCTGCAGGCC
GGCGGTTATC CGCTCGAGCT GCCCGCGCTG AGCCTGGGCG AAGTGATGGT CAAGCCCACG
ACCATGATCT ACCGCAACCT GCTGGCCATC GAATGCGAGG AGCTGCTGCG CAGCCTGCCG
ATCGACGGCG TGGTGCTGAT GGGCGGCTGC GACAAGACCA CGCCCGGCCT GGTCATGGGC
GCGCTGTCGA TGGACATCCC CGCCATCTTC CTGCCCGCCG GCCCGATGAT GAATGACCGC
TACAAGGGCC AGGCCGTGGG CGCGGGCACC CACACCAAGA AGTTCTGGGC CGAACGCACC
ATCGGCAACA TCGACGAGGC CGAATGGATC CACCTCGAAG CGCGCATGAC GCGCACGCCC
GGCACCTGCA ACACCATGGG CACGGCCAGC ACCATGACCG CCATTGCCGA GGCCATGGGC
CTGTCGCTGC CCGGCGCGAT GAGCATCCCG GCCGTCGACT CCGAGCACAG CCGCATGGCA
TGGCGCTGCG GCGAGCGCAT CGTCTCGATG GTGTGGGAAG ACCTGAAGCC CTCGCGCATC
GTTACCAAAG CCTCGTTCCT CAACGCCGTG GCCGCCTACA TGGCGCTCGG CGGCTCGACC
AACGCAGCGG TGCACCTGCC CGCGATGGCG GGGCGCGCAG GCATCGAGCT GAACATCGAC
GAGCTCGACG CGATCGCGCG GCGCGTGCCC GTCATCGCCA ACCTCTATCC GTCGGGCGAG
AAGCTGATGG AAGACTTCCA CTACGCCGGT GGCCTGCCGG CGGTGCTCAA CAGGATCGCG
GCGCACCTGG ACCTGTCGGC GCGCACCGTC ACCGGCCGCA CGCTCGGCGA GGACATCGCG
GGCTGGCCCG CGGAGGACGA CGGCACCATC CTCGACCCGG CCTCGCCGCT CAAGCAGGGC
ACGCCCGAGT GCCCCGAGGC CGGCATTGCG CTGGCCGTGC TGCGCGGCAA CCTGTGCCCC
GACGGCGCGG TCATCAAGCC TTCGGCCGCC ACGCCCGAGC TGCTGCGCCA CACCGGGCGC
GCGCTGGTGT TCGACTCGAA CGCCGAGATG CTCGCGGCCA TGGCCGACGA AGAACTCGAC
TGCGACGCGT CGACCGTGCT GGTGCTGCGC AACGGCGGCC CGGTCGGCGG CCCCGGCATG
CCCGAGTGGG GCAACCTGCC GATTCCCAAG AAGCTGCTGC GGCAGGGTGT GCGCGACATG
CTGCGCATTT CCGATTCGCG CATGAGCGGC ACGCACTACG GCACCTGCGT GCTGCATGTG
TCGCCCGAGT CGGCCATCGG CGGTCCGCTG GCGCTGCTCA AGACCGGCGA CACGATCCGC
CTGGACATCG GCGAGCGCCG CCTCGACATG CTGGTGTCCG ACGAAGAGTT GGCCGAGCGC
CGCAAAGAGT GGACGCCGCC CGCGCCGGCC TACGCGCGCG GCTACACGAA GATCTTCCAG
CACGAAGTGA CGCAGGCGCA CCTGGGCTGC GACTTCGCGA GCCTGGCCGG CAACGCGCCC
ACGCCCGAGC CGCCGATCTA CTGA
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| Protein sequence | MSTEAARPKT LQELRSQRWF ASDDIRGFAH RQRMQQQGLA REEFMGRPVI GIVNTWSELS
PCHAHLRERA ESVKRGVLQA GGYPLELPAL SLGEVMVKPT TMIYRNLLAI ECEELLRSLP
IDGVVLMGGC DKTTPGLVMG ALSMDIPAIF LPAGPMMNDR YKGQAVGAGT HTKKFWAERT
IGNIDEAEWI HLEARMTRTP GTCNTMGTAS TMTAIAEAMG LSLPGAMSIP AVDSEHSRMA
WRCGERIVSM VWEDLKPSRI VTKASFLNAV AAYMALGGST NAAVHLPAMA GRAGIELNID
ELDAIARRVP VIANLYPSGE KLMEDFHYAG GLPAVLNRIA AHLDLSARTV TGRTLGEDIA
GWPAEDDGTI LDPASPLKQG TPECPEAGIA LAVLRGNLCP DGAVIKPSAA TPELLRHTGR
ALVFDSNAEM LAAMADEELD CDASTVLVLR NGGPVGGPGM PEWGNLPIPK KLLRQGVRDM
LRISDSRMSG THYGTCVLHV SPESAIGGPL ALLKTGDTIR LDIGERRLDM LVSDEELAER
RKEWTPPAPA YARGYTKIFQ HEVTQAHLGC DFASLAGNAP TPEPPIY
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