Gene Vapar_5618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5618 
Symbol 
ID7975230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp324202 
End bp324936 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content61% 
IMG OID644796202 
Productsuccinate dehydrogenase and fumarate reductase iron-sulfur protein 
Protein accessionYP_002947476 
Protein GI239820291 
COG category[C] Energy production and conversion 
COG ID[COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 
TIGRFAM ID[TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATACCG ACAAACCCAC GAAGCAGAGA CAACTCACCG TACGAATCTC TCGAGGAACC 
GGCGATGGCT CCTTGTCGAC GTACTCGGTC CCCTGGCGCG AAAACCAGAC CGTGCTGGAC
GTCGTGACGG AGGTCCAACG GACCCAGGAG CCAGACCTTT CCTATCGATT CGCGTGTCGC
GTTGGCGTGT GCGGCTCCTG TGCGATGACG GTCAACGGAA AGCCCCGCTG GACCTGCCGA
ACCCATGTCA GCCGCGTGGA AGAGGGGGGG GTCATCGTCA TCGAGCCCCT TCGCAACATG
CCGCGCATCA AGGACCTCGT GGTCGATATG CGCGAGTTCT TTCAAAAGTG GAAAAAGGCG
GGCAGTACCT TTGTTGGCAC GGCAACACGG AATGATCCGC CGGCACGGGT GTCTCCCCAG
AGCAAGAAGC GCAGGCTGGC AGATGCCGCG ATCGAATGCA TCAATTGCGG CGTGTGCTAT
GCCGCCTGTG ACGTCGTCAC CTGGGACAAG GACTACCTGG GACCAGCCGC GCTCAATCGT
GCCTGGACCC TCTACAACGA CGAACGGCAT GCGGATCCCA AGGACGTTTT GCACAAGGCC
ACGTCCGGTG GCGGCTGCAA TTCGTGCCAC ACGCAAGGCA GTTGCATGAA GCATTGCCCG
GTCAGCCTGA GCCCGACCGG CAGCATTGCG GGACTGAAGC GAAGTGCGCT CCTGAGTTTC
CTCAAGCGAG ACTGA
 
Protein sequence
MDTDKPTKQR QLTVRISRGT GDGSLSTYSV PWRENQTVLD VVTEVQRTQE PDLSYRFACR 
VGVCGSCAMT VNGKPRWTCR THVSRVEEGG VIVIEPLRNM PRIKDLVVDM REFFQKWKKA
GSTFVGTATR NDPPARVSPQ SKKRRLADAA IECINCGVCY AACDVVTWDK DYLGPAALNR
AWTLYNDERH ADPKDVLHKA TSGGGCNSCH TQGSCMKHCP VSLSPTGSIA GLKRSALLSF
LKRD