Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5578 |
Symbol | |
ID | 7975190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 285037 |
End bp | 285690 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644796162 |
Product | transport-associated |
Protein accession | YP_002947436 |
Protein GI | 239820251 |
COG category | [R] General function prediction only |
COG ID | [COG2823] Predicted periplasmic or secreted lipoprotein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00026661 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCCG ACACACAGCT CAGGGCGGAC GTCCAAGCCG AACTCGAATG GGACCCCGCC ATCACTTCGA CGGACGTGGG CGTCATCGTC AACCACGGCG TGGTCACGCT GACGGGCCAT CTCGGCAGCT GCGCCGAGAA GCTCGCGGTG GAACAGGCCG CGCAGCGCGT CAGCGGCGTG AAGGCGCTGG CCATCGAAAC CTCGGTGAAG CTGGCCGCCG GCTTCGAACG CACCGATGCC GACATCGCAC AGGCTGCCGG GCACGCGCTC GAATGGAACG TGCAGGTGCC CCGCGACGCG GTGCGGCCGA TGGTCGAGGA CGGATGGGTC ACGCTGACCG GCGAAGTCGA GTGGGACTAC CAGCGCCAGG CCGCGGAATC GACGGTTCGC AACCTGCTGG GTGTCACCGG CATCACGAAC CTGGTGAGGA TCAAGCTGCA GCGGTGTTCC GCCGACGTGG AACGGCAGGT GCAGGACGCG CTCATCCGCG TGTTCCACGA CGCGCCGCGG CAGGTGGCGG TCGACGTGAA CGGCTCGCAG GTCGTGCTGC GCGGCAAGGT GCGTTCCTGG GCGGAGCTGG ACGCGGTGCG CGGCGCCGCC TGGTCCGCGC CGGGGGTGGT TTCGGTGGTC AACGAACTGG CCGTGGAAGC CTGA
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Protein sequence | MKSDTQLRAD VQAELEWDPA ITSTDVGVIV NHGVVTLTGH LGSCAEKLAV EQAAQRVSGV KALAIETSVK LAAGFERTDA DIAQAAGHAL EWNVQVPRDA VRPMVEDGWV TLTGEVEWDY QRQAAESTVR NLLGVTGITN LVRIKLQRCS ADVERQVQDA LIRVFHDAPR QVAVDVNGSQ VVLRGKVRSW AELDAVRGAA WSAPGVVSVV NELAVEA
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