| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5565 |
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| Symbol | |
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| ID | 7975422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 274519 |
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| End bp | 275736 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796149 |
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| Product | 2-nitropropane dioxygenase NPD |
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| Protein accession | YP_002947423 |
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| Protein GI | 239820238 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.286036 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGAT CCTCTGACGA AACAGCAGTC GCGCTGCAAG CGCTTTCGCG CGATGCGGGC
CTGCGCAACT GGCGCCTCAA GGGCGCCAAA CGCCTCCCCG TGATTCAGGG CGGCATGGGT
GTCGGCGTGT CGGCCGGCGG GCTCGCCGGC ACGGTCGCCG GGCTGGGCGG CATGGGCACG
ATCTCGGCCG TCGACCTGCG CCGGCTGCAT CCCGACCTGA TGGCTCGCAC GGCCCACCTG
AACGCCGAGC CGGACGCCGG GCAGCGCATC GACGCCGCCA ATCTCGAGGC GCTGGGCCGC
GAGATCGCGC GGGCGCGCGA GCTCTCCGGC GGGCGCGGCC TCGTGGCCGT GAACGTGATG
AAGGCGCTGA CCGCCTACGA GGCCTACCTG CGCCACGCCA TGGCCTGCGG CATCGACGCA
TTGGTGGTGG GCGCGGGCCT GCCGCTGGAC CTGCCCGAGC TCGCGCGCGA CCACCCCGAG
GTGGCGCTGA TCCCCATCCT CTCGGACGCG CGCGGCGTGC AGCTGGTGGT GCGCAAGTGG
GAGAAGAAGG GGCGCCTGCC CGATGCCATC GTGATCGAGC ATCCGCGGCT CGCGGGCGGC
CACCTGGGCG CTGCCAAGGT GGCCGACCTG CAGGACCCGC GCTTCGACTT CGACGTCGCC
ATTCCGCAGG TGCTCGAATT CTTCAAGACG GCCGGCCTCG AGGGCCGCAT TCCGCTGATC
GCGGCCGGCG GCATCGGCAG CCTCGAAGAC ATCCGGCGCC TGCAGGGCAT CGGCGCGGCG
GCGGTGCAGC TGGGCACCGC GTTCGCGGTG ACCGCCGAAT GCGATGCGCA TCCGGCCTTC
AAGCAGGTGC TGGCCGATGC CCAGCCCGCC GACATCGTCG AGTTCGTCAG CACGGCGGGC
CTGCCCGCGC GCGCGGTGCG CACGCCGTGG CTCGACAAAT ACCTGCGGCT GGAGGAGCGG
CTGCAGCACA AGGCGCACAA GAAGGAAAGC TGCACCATGC GCTTCGACTG CCTGGCGCAC
TGCGGCCTGC GCGACGGCAC CCCGAGCTGG GGCCAGTTCT GCATCGACAA GACACTGGGG
CACGCGCTGG AGGGCCACCT CGACCGCGGC CTGTTCTTCC GGGGCGCGGG GGCGCTGCCC
TTCGGCAGCG AGATCCGCCC GGTGCGCGAC CTGATGCGAT GGCTGCTCGG CGGCACTCGC
CCGGCGGGCG TGGCCTGA
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| Protein sequence | MDRSSDETAV ALQALSRDAG LRNWRLKGAK RLPVIQGGMG VGVSAGGLAG TVAGLGGMGT
ISAVDLRRLH PDLMARTAHL NAEPDAGQRI DAANLEALGR EIARARELSG GRGLVAVNVM
KALTAYEAYL RHAMACGIDA LVVGAGLPLD LPELARDHPE VALIPILSDA RGVQLVVRKW
EKKGRLPDAI VIEHPRLAGG HLGAAKVADL QDPRFDFDVA IPQVLEFFKT AGLEGRIPLI
AAGGIGSLED IRRLQGIGAA AVQLGTAFAV TAECDAHPAF KQVLADAQPA DIVEFVSTAG
LPARAVRTPW LDKYLRLEER LQHKAHKKES CTMRFDCLAH CGLRDGTPSW GQFCIDKTLG
HALEGHLDRG LFFRGAGALP FGSEIRPVRD LMRWLLGGTR PAGVA
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