Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5560 |
Symbol | |
ID | 7975417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 263966 |
End bp | 271156 |
Gene Length | 7191 bp |
Protein Length | 2396 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796144 |
Product | YadA domain protein |
Protein accession | YP_002947418 |
Protein GI | 239820233 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.503173 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAGT CGTACCGCAG CATCTGGAAC GAGGCGTTGG GCGCCTGGGT CGCCGCATCC GAAACCACCC GCGCGCGTGG CAAGCGAGGC GGCAGCCGGG TGGCCATTGC CGCGGCGGCG AGCGTGCTCG GATTGCTATC GATCTCGGCG CAGGCGCAGT CGGTGAACTG CAATGTGTCG CCTTGGAATG CGTACAGCGG CACGGCGTCC TGCATGGGCC TCAACTCCTC GGCCGCGGGA ATCGGAGCCA CTGCGCTGGG CTCCCTCGCA GCTGCCGATG TGCTTGGTGC GCTCTCAGTG GGGTATGCCG CCCATACCAC AGGACAGAAT GCCATCGGCT TGGGCTTTGG GGCCTATGCC ACAAGCATCA ATTCGATCTA TCTGGGCGCA CGTACCGCCG CCGGTACCGG CGCCTTGGCT GCGGGTGCTA TCGGGATCGG CACGGATGTG ACCGCCAGCG CGGGCAATGT CATTGCCATC GGAACCCTGG CCCAATCCAG CGCGCTCAAC GCCGCGGCCA TCGGCATCAG AGCAAACGCC GCCGGACAGG CGGCAGTCGC CATGGGTCAG GATGCGAACG CGCAGTCTGC GAACAGCGTT GCCATTGGTT TGCAAGCCAC CACGTCAGGT TCGACCGGTG CAGTCGCGAT CGGCGCCCGC TCCAGCACGA GTGGTATCAA CGCGACATCG ATCGGGGTCG TCGCAAATGC CACGAACACC GATGCCCTCG CCGTCGGTAC GAACTCGGCC GCAACCGGGC TGCGCAGCAT CGCCGTTGGC GCCGAGGCAT CTGCAAGCAT GCAGGACGCC GTCGCGCAAG GAACTCAGGC TAGCGCGTCC GCAGTGAATG CCACCGCGAT AGGACATCTG GCAACGGCAA GCGACGACGC AGCCACCGCC GTCGGCAACA GCGCCCGGGC GCTGGGGAAC AGTTCGCTCG CGCTCGGCGC GCAAGCGGTC GCTGTCGGGA CCAGCACCGT GGCGGTCGGC CAGGGCGCCG GCGCAGGCTC GACGGTCGCC AATACGGGTT CGACCGCCGT GGGCATTGCC GCCGGCACGC TGGTCAGCGG CGCGCAGAAC ACCGCCATGG GCGGAGGCAT TGCGAGCGTG ATGCGAGGCG CAGGTTCAGG TGTCACGGGA ACGCGCAACG TCGCCTTCGG TTCGGGCGAT GGCACGGTCG CCTACGACGC CAACCTGGAC GCTTCGGCAG GCAGCTTGGT GAGCGGCAAC GACAACATCG CCATCGGCAC CAACGCAGGC ATCGGCGTGG CGGGAAATGG AACCACGTCG ATCGGCTTGA GCGCGAATGC GAGCGCGAAC AACGCAATCG CCCTCGGTTC GCTGGCAAAG GCATCGGCAG CAAACACTCT CGCGCAAGGC ACCCTCGCCA CTGCAGGCGG CATCAACGCC ATCGCCATCG GTACCCAGGC GATCGCATCG GCGGTCAATT CCATCAATCT TGGCGCGCGC ACGGCTGCAG GAGCGGGTGC CCTGGCGGAG AGCGCCATCG CCATCGGCAC GGACGTGACC GCCTCTCAAG ATCGCGCTGT CGCCATGGGG ATCGGAAGCC GGGCCACCGG CCTCGATGCG CTGGCGGCCG GTACCCGGGC CAATGCGGCG GCCGACAACG CGACCGCGCT CGGCTCGGGC GGGACCACTG CCGCGACTGC CGTGCGCGCC ACCGGCGTGG GTTCGCTCGC CATCGGCGGC AATGCCACCC TGGGTGCCTT TGCATCGGGC GCCAATGCCA TCGCCATTGG CGGTGAATCC GTCGCCGATG CCGCTGATGC AGTCGCCATC GGCCGGGCCT CCCGGGCCAC CGGCGGCCGC GCAGTCGCCA TCGGCTCGGG CAACGTCGCG AGCGGCAACG GCGCCGTGGC AATCGGCGAT CCCAACACCG CGACCGGCAA CGGCGCGATT GCCTCGGGCC TGGACAACAC CGCCACCGGC AATGGTTCGG TCGCAATGGG CAACACCAAC ATGGTGGGCG GCGGCGGCCA GGCCGTGAGC ACCCCCGGCA CGGCGGCGCA GGGCGCGGTC GGCATCGGCT ACCAAAACAC GGTGGTCGGC CAGGGCAGCG TGGCGATCGG CAGCACCAGC AGCGCGCTGG CCGCGGGCGC GGTGGCGTTC GGCGACACGG CGGTGGCCAA CAACGCGGAC GACGTGGCAC TGGGCTCGGG CTCCACGACG AGCAAGGCCA TCGGCACGGC CAGCGCCGTG ATCGGCGGAA CCACCTACAA CTTCGCCGGC ACCACGCCAT TGAGCACGGT CAGCGTCGGC GCACTGGGTG CCGAGCGCAC CATCACCAAC GTGGCGGCGG GCCGGATCTC CCAGACCTCG ACCGATGCCA TCAACGGCTC GCAGCTCTAC GCCACCAACC AGGCGGTGCA GGCGATCGCG GCCAGCACGC CGACCCACTA CTACAGCGTG AACGACGGCG GCGTGCAGCA GGGGAACTAC ACCAACAACG GCGCAACTGG CGCCAATGCG CTGGCGGCTG GCGTGGGCAC CCTGGCGGCG GGCACGCAAG CCACGGCCGT GGGCCCGTTG GCAAGCGCCT CCGGAAAGTC CTCGATTGCG CTGGGCCTCC AATCCGATTC GAGCAATGTC AGCACCATCG CGGTCGGCAA CCGGTCCAAC GCCTCAGGCT CCAACGCCAC CGCGATCGGA TCGGTGTCCA ATGCCTCCGG CGACAACGCC ATTGCATTCG GATCGAGCAC CATTGCGTCG GCCGCGAATG CCACTGCCGT GGGCAACCGG GCCAATGCGA GCGCTGCCAA TGCGCTCGCG CTCGGCGTTG GCGCCACGGC CGCCCAGGCC GACGACGTGG CACTGGGCTC GGGCTCGGTG ACGGCCGCGG CCGTCGGCAC GGCCAGCACC GTGATCAACG GCACGACCTA CAACTTCCAG GGCACCACGC CGACTTCGAC GGTGAGTGTC GGCGCTCCGG GCGCCGAGCG CACCATCACC AACGTGGCGG CCGGGCGGAT CTCCGGCACC TCGACCGACG CCATCAACGG CAGCCAACTG TTCGCCACCA ACTCGGCGAT CGATGCCGTG GGCGTCACCG CCGGCAAGGG CTGGAACGTG ACCACGGGCC AGACCGGCAC CGGCACTGCG ACGGGCACCA GCCTGCAGAA CATCGCGCCG GGCGGCACCG CCACCTACAC GGCGGGCAAC AACATCGCCA TCACGCAGAA CGGCGCGGAG GTGCAGATCG CCACCAGCGC CACGCCCAGC TTCACCAGCG TGACCACGGG CGGCACGGTG CTGAACAACA ACGGCCTCAC GATCGCGGGC GGCCCGAGCG TGACGATCAA CGGCATCAAC GCCAACAACA CGGTCATCAC CAACGTGGCG CCCGGCGTGG CGCCCACCGA TGCGGTGAAC GTGGACCAGC TGACCGACAC GGTCGCGGCC AGCAAGACCA AGTACTACAG CGTGAACGAC AACGGCGTGG CCGGAGGCAA CGTCAACAAC GACGGCGCAC AAGGCATCAA CTCCATTGCC GCAGGCGTGG GCGCCAGCAC CACCACGGCA GCGACGGGCA GCGTGGCCAT GGGCACCAAC GCCGCGGTCA GCACGGTCAA TGGCGTGGCG CTGGGCTCCG GTGCATCAGC GGGCGCCAAT GCGGGCGACG TGGCGCTGGG CTCGGGCTCG ACGACGAGCA AGGCGGTCGG CACGGCCAGC ACCGTGATCA ACGGCACGAC CTACAAGTTC GAGGGCACGA CGCCGGCGAG CACCGTGAGC GTGGGCAGCG CGGGCAACGA GCGCACCATC ACCAACGTGG CAGCCGGGCG GATCTCCCAG ACCTCGACCG ATGCCATCAA CGGCTCGCAG CTGTTCGCCA CCAACGCCGC CATCGACGAC GTGGCCACGA CCGCCGGCAA GGGCTGGAAC GTGACCACGG CGCAGACCGG CACCGGCACC GCCACGGGCA CCAGCGTGCA GAACATCGCG CCCGGTGCCA CCGCCACCTA CACGGCGGGC AACAACATCG CCATCACGCA GAACGGCGCC GAAGTGCAGA TCGCCACCAG CGCCACGCCC AGCTTCACCA GCGTGACCAC GGGCGGCACG GTGCTGAACA ACAACGGCCT CACGATCGCG GGCGGCCCGA GCGTGACGAT CAACGGCATC AACGCCGGCA ACACGGTCAT CACCAACGTG GCGCCCGGCG TGGCGCCCAC CGATGCGGTG AACGTGAGCC AGCTGAACAC CCAGGTGGAA GGGGCCAAGA TCCGCTACTA CAGCGTGAAC GACAACGGCA CCAAGCAGGG GAACTATGCG AACGACGGCG CCACGGGCAT CAATGCCCTG GCGGCCGGCG TGAACGCCTC GGCGGCCGGT GCCAGCGGCG TGGCCATGGG CAACGGCTCG CGCGCCAGCG CCGCGGACAC CGTGGCGATC GGCAGCGGCG CAACGGCCGA TTCGGCCGAG GCCGTGGCCA TCGGCAAGGG CGCGACGGCC ACGGGCGGCA AGGCCATCTC GATCGGTTCA GGCAACACGG CCTACGGCGA CGGCGCCGTG GTGATCGGCG ATCCGAGCTA TGCGAGCGGC ACCGGCGCCT TCACCGGCGG CGCCAACAAC ATTGCCAACA GCGACGGCAC GGCCACGGCC ACCGCGGCCA ACCAGGCCAA CGGTGCGGTC GCGATCGGCA ATGGCAACAA GGCGATCGGC CAGGGATCGG TGGCACTGGG CAATGGCTCC ACCGCAGGTG CGGCCGGCAA GGCAGGCAGC GTGGCCATCG GCAATGCCGC GACGGCGGCT GCCAGTGCGG GCGACGTGGC CCTGGGCTCG GGCTCCGTGA CCGCTGCTGC GGTGGGCACG GCCAACGCCG TGATCAACGG CACGACCTAC AACTTCCAGG GCACCACGCC CGCGAGCACC GTGAGCGTGG GCAGCGTGGG TGCCGAGCGC ACCATCACCA ACGTGGCGGC CGGCCGGATC TCCGGCACCT CCACCGATGC GATCAACGGC TCGCAGCTGT TTGCCACCAA CCAGTCGATC GAGGACCTGA GCACCACGGT CACCACCAAC AAGACCAAGT ACTACAGCGT CAACTCGACC GGCGGCACCA ACGAAGACAA CCTGGGCGCT ACCGGAGCCG ACGCCATCGC GTCGGGCAAG AACGCGGCGG CGGCCGGCAC CTCGGCCGTG GCCATCGGCC TCGGCGCCAC GGCGTCGGAC GCCAACAGCG TGGCGCTGGG TTCGGGCTCC ACCACGGCCG CGGCCGTCGG CACGGCCAGC GCGGTGATCG GCGGCACCAC CTACAACTTT GCCGGCACCA CGCCGGGGAG CACGGTGAGC GTGGGCAGCG TGGGCGCCGA GCGCACCATC ACCAACGTGG CGGCGGGCCG GCTTTCCAAC ACCTCGACCG ATGCCATCAA CGGTTCGCAG CTCTTCGCCA CCAACCAGCA GGTGACGGCG AACACCACGC AGATCACCAA CCTGGGCAAC ACGATCGGCG ACATCAACAA CGGCGGGGGC ATCAAGTATT TCCATGCCAC CTCGACGCTG CCCGATTCGC AGGCACTGGG CACCGACTCG GTCGCCATCG GCCCGAATGC GGTCGCCAAC AACGCGAACG ACGTGGCACT GGGCGGCGGC TCCACCACAT TGGCGGCGGT GGGCACGGCC AGCACGGTGA TCAACGGCAC GACCTACAAC TTCGCCGGCA CCACACCGGG GAGCACGGTG AGCGTGGGCA GCGTGGGCGC CGAGCGCACC ATCACCAACG TGGCGGCGGG CCGGATCTCG GGTGGCTCGA CCGATGCCAT CAACGGCTCG CAGCTGTTCG CCACCAACCA GTCGATCGAG AACCTCAGCA CCACGGTCAC GGCCAACAAG ATCAGGTACT ACAGCGTCAA CTCCACGGGC GGGGGCAACG AGGACAACCT GGGCGCCACG GGTACCGACG CCATTGCGTC GGGCAAGGAT GCGAGCGCAA CGGTCGCCGG CGCGGTGGCC ATCGGCTCGG GCGCCGTGTC CGACCGCTTC GTGGCACCCT CCACCGGCAG CATCCCGGCG GGCAGCTCGC TGATCAGCTA CAACACCACC GACCGCGCGC TGCTGGGCGC CCTGTCCCTG GGCAGCGCCA CCAGCTACCG CCAGATCACC AACGTGGCCG ACGGCACGCA GGCGCAGGAC GCGGTCACGG TGCGGCAGCT CGCGGGCGCG CTGACCTCCT TCGCGGTCAC GCCGACGCTG TACTTCCATG CCAACTCGAA CGCCGCGGAC TCGCTGGCCA TCGGCGCCGA GTCGGTGGCG GTGGGCCCGC AGACGGTGGT CAACGGCAAC AACGGCATCG GCATCGGCAA CGGCGCGGTG GTGCAGCAGA CCGCGCCGGG CGGCGTGGCG ATCGGCCAGG GCGCGACCTC GCACATGGCC GACTCCATTG CGCTGGGCAC GCAGTCTTCG GCCGCGGCCG TGCAGGGCGT GGCGCTGGGC GCGGGCAGCA GCGTGACGCA GGCCGGCGGC GTGGCACTGG GCGCGGGCTC GGTGGCCTCC ACCGCCGCGG GCGTGGCCGG CTACGTGCCG CCCACGGCCA CCGAGGCACA GCGCATCGCC ATTGGCGCCA CCACCAGCAC GCTGGCGGCG GTGTCGGTGG GCGATGCGGC CAACGGCCAG TTCCGCCAGA TCACCGGCGT GGCCGCGGGC TCGGCCGACA GCGATGCGGT CAACGTCTCG CAGCTGCGCG GCGTGCAGGG CCAGGTGGCG GTGATCGACC AGTCGACCGT CAAGTACGAC ACCAACCCCG ACGGCTCCAT CAACTACAAC AGCGTGTCGA TGGGCGGCAG CAACGCGACC GGGCCGGTCA CGGTGCACAA CGTGGCGCCC GGCGTCGCGG GCACCGATGC GGTCAACGTG AACCAGCTCA ACAGCGGCAT CGCGGGGGCC AACGCCTACA CCGACGCGCG CGTCAACGCC CTGGGCGGCG AGATCCGCAG CATTGCCAAG GATGCGAGCG CAGGCGCGGC CGGCGCAATG GCCATGGCCA CCATGCCGCA GGCCTACATC CCGGGCAAGA GCATGGTGTC CGCGGGCGTG GCGGGTTTCG ACGGCCAGGC CGCCCTTGCC ATCGGCGTGT CGAAGCTCTC GGACAACGGC CGGTGGGTCG TGAAGTTCAG CGGCTCGGCC AACACGCGCG GCAAGGTCGG CGTGGCGGCC GGTGCGGGCT TCCACTGGTA G
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Protein sequence | MNKSYRSIWN EALGAWVAAS ETTRARGKRG GSRVAIAAAA SVLGLLSISA QAQSVNCNVS PWNAYSGTAS CMGLNSSAAG IGATALGSLA AADVLGALSV GYAAHTTGQN AIGLGFGAYA TSINSIYLGA RTAAGTGALA AGAIGIGTDV TASAGNVIAI GTLAQSSALN AAAIGIRANA AGQAAVAMGQ DANAQSANSV AIGLQATTSG STGAVAIGAR SSTSGINATS IGVVANATNT DALAVGTNSA ATGLRSIAVG AEASASMQDA VAQGTQASAS AVNATAIGHL ATASDDAATA VGNSARALGN SSLALGAQAV AVGTSTVAVG QGAGAGSTVA NTGSTAVGIA AGTLVSGAQN TAMGGGIASV MRGAGSGVTG TRNVAFGSGD GTVAYDANLD ASAGSLVSGN DNIAIGTNAG IGVAGNGTTS IGLSANASAN NAIALGSLAK ASAANTLAQG TLATAGGINA IAIGTQAIAS AVNSINLGAR TAAGAGALAE SAIAIGTDVT ASQDRAVAMG IGSRATGLDA LAAGTRANAA ADNATALGSG GTTAATAVRA TGVGSLAIGG NATLGAFASG ANAIAIGGES VADAADAVAI GRASRATGGR AVAIGSGNVA SGNGAVAIGD PNTATGNGAI ASGLDNTATG NGSVAMGNTN MVGGGGQAVS TPGTAAQGAV GIGYQNTVVG QGSVAIGSTS SALAAGAVAF GDTAVANNAD DVALGSGSTT SKAIGTASAV IGGTTYNFAG TTPLSTVSVG ALGAERTITN VAAGRISQTS TDAINGSQLY ATNQAVQAIA ASTPTHYYSV NDGGVQQGNY TNNGATGANA LAAGVGTLAA GTQATAVGPL ASASGKSSIA LGLQSDSSNV STIAVGNRSN ASGSNATAIG SVSNASGDNA IAFGSSTIAS AANATAVGNR ANASAANALA LGVGATAAQA DDVALGSGSV TAAAVGTAST VINGTTYNFQ GTTPTSTVSV GAPGAERTIT NVAAGRISGT STDAINGSQL FATNSAIDAV GVTAGKGWNV TTGQTGTGTA TGTSLQNIAP GGTATYTAGN NIAITQNGAE VQIATSATPS FTSVTTGGTV LNNNGLTIAG GPSVTINGIN ANNTVITNVA PGVAPTDAVN VDQLTDTVAA SKTKYYSVND NGVAGGNVNN DGAQGINSIA AGVGASTTTA ATGSVAMGTN AAVSTVNGVA LGSGASAGAN AGDVALGSGS TTSKAVGTAS TVINGTTYKF EGTTPASTVS VGSAGNERTI TNVAAGRISQ TSTDAINGSQ LFATNAAIDD VATTAGKGWN VTTAQTGTGT ATGTSVQNIA PGATATYTAG NNIAITQNGA EVQIATSATP SFTSVTTGGT VLNNNGLTIA GGPSVTINGI NAGNTVITNV APGVAPTDAV NVSQLNTQVE GAKIRYYSVN DNGTKQGNYA NDGATGINAL AAGVNASAAG ASGVAMGNGS RASAADTVAI GSGATADSAE AVAIGKGATA TGGKAISIGS GNTAYGDGAV VIGDPSYASG TGAFTGGANN IANSDGTATA TAANQANGAV AIGNGNKAIG QGSVALGNGS TAGAAGKAGS VAIGNAATAA ASAGDVALGS GSVTAAAVGT ANAVINGTTY NFQGTTPAST VSVGSVGAER TITNVAAGRI SGTSTDAING SQLFATNQSI EDLSTTVTTN KTKYYSVNST GGTNEDNLGA TGADAIASGK NAAAAGTSAV AIGLGATASD ANSVALGSGS TTAAAVGTAS AVIGGTTYNF AGTTPGSTVS VGSVGAERTI TNVAAGRLSN TSTDAINGSQ LFATNQQVTA NTTQITNLGN TIGDINNGGG IKYFHATSTL PDSQALGTDS VAIGPNAVAN NANDVALGGG STTLAAVGTA STVINGTTYN FAGTTPGSTV SVGSVGAERT ITNVAAGRIS GGSTDAINGS QLFATNQSIE NLSTTVTANK IRYYSVNSTG GGNEDNLGAT GTDAIASGKD ASATVAGAVA IGSGAVSDRF VAPSTGSIPA GSSLISYNTT DRALLGALSL GSATSYRQIT NVADGTQAQD AVTVRQLAGA LTSFAVTPTL YFHANSNAAD SLAIGAESVA VGPQTVVNGN NGIGIGNGAV VQQTAPGGVA IGQGATSHMA DSIALGTQSS AAAVQGVALG AGSSVTQAGG VALGAGSVAS TAAGVAGYVP PTATEAQRIA IGATTSTLAA VSVGDAANGQ FRQITGVAAG SADSDAVNVS QLRGVQGQVA VIDQSTVKYD TNPDGSINYN SVSMGGSNAT GPVTVHNVAP GVAGTDAVNV NQLNSGIAGA NAYTDARVNA LGGEIRSIAK DASAGAAGAM AMATMPQAYI PGKSMVSAGV AGFDGQAALA IGVSKLSDNG RWVVKFSGSA NTRGKVGVAA GAGFHW
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