Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5558 |
Symbol | |
ID | 7975415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 260736 |
End bp | 262598 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644796142 |
Product | histidine kinase |
Protein accession | YP_002947416 |
Protein GI | 239820231 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4585] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.810149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGAAAG TCACGGCCAC CGGCTGCGAG AATCCGCAGC CAATGAACCT CGCACGTCGC ATCGACCCGC GGCGCTCCAT GGCTGCCGCG ATCGGCTGGC TGCTGATTGC GCTCACGCTG TGCCTGGCGC TCGCGGCCAA CCTGTGGCTG CGCAGCTTCG TGCGTGCGAC GCTGCTCGAG CAGCACGGCC AGCGCCTGGA GGCCGCGGCC GAGCACGTCA GCGCCGAACT CGACACCGCG CTGCTGCTGC GCCTGCAGGC CGTCAGCGTG GTGGCGGCCA TGCTGTCGGA GGACGTGCAG CGCAGCGAAG GCGCACGCCT GAAGCGCTCG CTCGAGGCGG TGCGCCGCGG CGTGCCCGAC CTGATCTGGC TGGCGGTGAC CGATGCCGAC GGCTTCATCG TCGCCGCCAC CGACGAACAG GTGGTCGGCC AGAACGTCAA CCAGCACGCC TGGATCTCGC AGGGCCTGGA CGCCGCATGG ATCGAGGAAG GCCGCTCGCC GCAGGAGCGC TTCCTGAAGC TCACAGCGCC TGTGCGCAAC GCAGACGGCG CGATCATCGG CGTGGTGGCC GCGAACCTCC GCTGGAACTG GGTGCAGAAG ATGATGGCCG AGATCCGCGC ATCGCCGGGC GAATGGCTGC TGATCGACCG CGACGGCATC GTGCGCCACG GGCCGAGCGC GCTCCTGGGG CAGCGCTGGC AGGATGCCGG CGATCCGATC ACGCCCTTCG ATCCCGTGGT CGCGGGCCTG GGCAACGACG GATCCGATCT GCCCATGCGC ATCCGCACAA GGCGGCTGCT GGACAACCGG CCCTACCTGA TCGCGACCCC GCCCAATGCG CGCGAGGGCA CGCTGCGCCG GCTCGGCTGG CAGGCCGTGG TGATCCAGCC GGTCGAATCG GTCGCGGCGT TTGCGACCGC CATCGAATGG CGCATCTCGA TCGTGCTGAG CCTGCTGGGC CTGGCCGCCG CGGTTGCGGG CATTGTCATG GCGCGCCGGC TCACGCGCCG TGTCAGCGTG ATTGCCCATT CGGCCGACGC GGTGCTGGCC GGCAGCGCCA CGCGCATCGA GGTGCCGCAA GGCGCCGATG AAGCCGCGCG GCTGGGCAGC GCGCTCGACC GGCTGCTGGA CACGCTGCAG CGCGAACGCG ACGAGCTGCG CCGGCTCAAC GCCGAGCTGG ACGAACGCGT GCGGCAGCGC ACCGAAGAGA TCAATCGGCT CGCGCAGGAA TCGCGCGATG CGGCGGTGGT GCGCGAGCGG CTGCGGCTCG CGCGCGGACT GCACGACACG CTGGCGCATT CCATGATGGC AATGCTCACC GAAATCCGCG TGCTCAAGCA CCTGGCATCG AACCGGCCCG ATGCGCTGCC GAACGAGCTG GTGCGGGCCG AGCGCGCAGC GCGCGACGGA CTGGACGAGG CACGCCGCGC GATCGACCAG CTGCGCAGCA ACCCGGTGCG CGACATCGGG CTGGGCGCAG CGTTGGCCGA GCTGGCCAAG AGCCTGGGCG AGCGCTCCGG CATCGAGCTC GACTGCCGGA TCGACCCCGC CTTGTCCGCC CTTGCGGCCG AGCCGGCGGA AACCGTGTTC CACATGTGCG AGGAAGTGCT GCGCAACGTC GAGCGGCACG CGGGCGCGGC ACGCCTCCTG ATCCGCCTGC AGCGCATGGG AAGCGACGGC ATCGAACTGG AGATCGCGGA CGACGGCATT GGCTTCGAGC CGAGCGCAGG CGCCGCGGGG CACTACGGGC TCGTCGGGCT GCGGGAGCAG GCCGAAGCGA TCGGCGCCCA CCTGCGCATC GACAGCCGCA GCGGCGAAGG CACCCGCGTA TCGCTGCGGT GGAGGCATGC GGGCGCAGCC TGA
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Protein sequence | MPKVTATGCE NPQPMNLARR IDPRRSMAAA IGWLLIALTL CLALAANLWL RSFVRATLLE QHGQRLEAAA EHVSAELDTA LLLRLQAVSV VAAMLSEDVQ RSEGARLKRS LEAVRRGVPD LIWLAVTDAD GFIVAATDEQ VVGQNVNQHA WISQGLDAAW IEEGRSPQER FLKLTAPVRN ADGAIIGVVA ANLRWNWVQK MMAEIRASPG EWLLIDRDGI VRHGPSALLG QRWQDAGDPI TPFDPVVAGL GNDGSDLPMR IRTRRLLDNR PYLIATPPNA REGTLRRLGW QAVVIQPVES VAAFATAIEW RISIVLSLLG LAAAVAGIVM ARRLTRRVSV IAHSADAVLA GSATRIEVPQ GADEAARLGS ALDRLLDTLQ RERDELRRLN AELDERVRQR TEEINRLAQE SRDAAVVRER LRLARGLHDT LAHSMMAMLT EIRVLKHLAS NRPDALPNEL VRAERAARDG LDEARRAIDQ LRSNPVRDIG LGAALAELAK SLGERSGIEL DCRIDPALSA LAAEPAETVF HMCEEVLRNV ERHAGAARLL IRLQRMGSDG IELEIADDGI GFEPSAGAAG HYGLVGLREQ AEAIGAHLRI DSRSGEGTRV SLRWRHAGAA
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