| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5532 |
|---|
| Symbol | |
|---|
| ID | 7975389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 235428 |
|---|
| End bp | 236333 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796117 |
|---|
| Product | dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_002947391 |
|---|
| Protein GI | 239820206 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAT CAACAGCTTC CCTCAGGACC GCCCTGGACG GCATCTCAGG CATCCTGGTG
ACGCCCTTCG ACGATGCGGA CCACATCGCG CCCGATCGCC TGGGCCCCGT CGTCGACCGC
GCCATCGAGG CCGGCGTCCA TGTGCTGGTG GCCAACGGCA ACACCAGCGA GTTCTTCGGC
CTGACCATGG CGGAGGCCGA GCGCATGGTG CATGCCGCGG CGGAACATGT CCGTGGCCGC
GTGCCCTTGC TGGGTGGCGT GGGGCGCAGC GTCCACGACG CCTGCGCCCT GGCGCGCGCC
TCACGCCAGG CAGGTGCCGC TGCCCTGATG GTGCATCAGC TGACGGACCC TTTCGTCGCG
CCCAGCGGTG TGGTCACGTA TGTGCGCCGG GTTGCCGACG CGGCGGACGG CCTGCCTGTC
GTGCTCTATC TGCGTGACGA CGCGATCGGT CTGCCGGTGA TCGAAGCCCT GTGCCGAATC
CCGCAGGTCA TCGGCGTGAA ATGGGCATCG CCCACGCCCT TGCGCCTGGT GCAGGCCATG
GCGCAGGTGG CCGATCGCGG CCTGGCCTGG GTGTGCGGAC TGGCCGAGCC CTGGGCCCCG
CCGATGTATG CGGTGGGTGC CCGCGGCTTC ACCTCGGGGC TGATCAACGT GCGGCCCGAC
CTGTCCGTGC GCATTCACAC CGCGCTCGCG AAGGGAGATC ACCAGCTGGC GATGGAATTG
ATCGGCGGCA TCGCGGCCTT CGAGGAATTG CGCACGCATG AGCGCAACGG CTCGAACGTG
AGCGTGGTGA AAGCGGCGCT GCAATACGCG GGGCGCGACT GCGGCGCGGC CCGGCCGCCC
AGCACCTGGC CGCTGCCGGA CGCGGATCTG GCGCAGCTCA AGCAGTTGGT CGACGGCTGG
CAATAG
|
|---|
| Protein sequence | MTESTASLRT ALDGISGILV TPFDDADHIA PDRLGPVVDR AIEAGVHVLV ANGNTSEFFG
LTMAEAERMV HAAAEHVRGR VPLLGGVGRS VHDACALARA SRQAGAAALM VHQLTDPFVA
PSGVVTYVRR VADAADGLPV VLYLRDDAIG LPVIEALCRI PQVIGVKWAS PTPLRLVQAM
AQVADRGLAW VCGLAEPWAP PMYAVGARGF TSGLINVRPD LSVRIHTALA KGDHQLAMEL
IGGIAAFEEL RTHERNGSNV SVVKAALQYA GRDCGAARPP STWPLPDADL AQLKQLVDGW
Q
|
|---|
| |