| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5514 |
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| Symbol | |
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| ID | 7975371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 215329 |
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| End bp | 216942 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796100 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_002947374 |
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| Protein GI | 239820189 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCGG GCACCGGCGG CTACGACTAC ATCATCGTCG GCGCCGGTTC GGCCGGTTGC
GTGCTGGCCA ACCGCCTGAG CGCTGATGCG CGCTGCCGCG TGCTGGTGCT CGAGGCGGGC
GGGGAGGGCG GTGCCTTCTG GCTGCGCATG CCGATCGGCT ACTTCCGCAC CATCTACGAC
CCGCGCTATT CATGGCAGTT TGCCGTGGAG CCGCAGGAGG CCACGGGCAA CCGCGCCATC
GTGTGGCCGC GCGGCAAGGT GCTGGGCGGC TCCAGCGCGA TCAACGGCCT GCTGTACATC
CGCGGCCAAC ATGCCGACTT CGACGACTGG GCCGGCGTGG CGGGTGCCAC GGGCTGGAGC
TTTCGCGAGG TGCTGCCGTA CTTCAAGAAG TCCGAGCGCT ACCAGGGCGG CGAGAGCGAA
TACCACGGCG CCTCGGGCGA GCTGTGCGTC TCGGACCTGC GGAACGAACA CCCCTACTGC
GCCGCCTGGA TCGAGGCGGG CGTGCAGGCC GGCCACGGCC GCAACCCGGA CTTCAACGGC
GCGCGCACCG AAGGCCTGGG CGCCTACCAG CTGACGCTGC GCGGCCACTG GCGCTGCGAT
GCGGCCACGG CCTTCCTGGC GCCGGTGCGC GCCCGGCCGA ACCTCACGGT GCTGACCGGC
GTGCACGTGA TGCGGGTGCT GATCGAGCAG GGCCGCGCGG TCGGCGTGGA ATGGCTGCAA
GACGGCGAAC TGCGCAACGC GCGCGCGGAT GCCGAGGTGC TGCTGGCCGC GGGCGCACTG
CAGTCGCCGC AGCTGCTGCA GCTGTCGGGC GTGGGCCCGG CCGGCCTGCT GCGCGGCCAC
GGCATCGCGG TGCAGGCCGA TGCGCCGCAG GTCGGCGAGA ACCTGCAGGA CCACTACCAG
GCGCGCGTGA TCGTCAGGCT CAGGAAGCGC ATGTCTCTGA ACGATCAGGT GCGCAACCCG
CTCGCGCTGG CCACGATGGG CGCGCAGTGG CTGTTCCGCC AGCGCGGCCC GCTCACGGTG
GGTGCGGGGC AGGTCGGCGG CATGGTCTGC AGCCCGCATG CCGAGGGCGG CCGCCCCGAC
GTGCTGTTCA ACGTGATGCC GCTGTCGGTG GACAAGCCGG GCGATCCGCT GCACCGCTTC
TCGGGCTTCT CGGCCTCGGC CACCCAGTGC CGGCCGCTGT CGCGCGGCAC GGTGCGGATC
CGCTCGGCCG ATCCGCTGGC GCCGCCGCGC ATCGTCTCCA ACTACCTGAG CGATCCGCAC
GATGCCAAGG TGCTGGTGGC GGGCCTGAAG ATGCTGCGCG AGATCTACCG CCAACCGGCG
TTCCGCGACC TGGTGACGGA CGACGAATAC CTGCCCGGGC GCGAAGCCGC CGACGACGCC
GCGCTCGAGG CCTTCGCGCG CCACAAGGGC GGCACCGTGT TCCATCCCGC GGGCACCTGC
CGCATGGGCG GCGACGCGCT CTCGGTGGTG GACCCGCAAC TGCGCGTGCG CGGCATCGAG
CGGCTGCGCG TGATCGACGC GGCCGTGATG CCGGCGATGG TGTCGACCAA CACCAATGCC
GCGTCGATCA TGATTGCGGA GAAGGGAGCG GCGCTGGTGC GGGAGGGCAA GTGA
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| Protein sequence | MTAGTGGYDY IIVGAGSAGC VLANRLSADA RCRVLVLEAG GEGGAFWLRM PIGYFRTIYD
PRYSWQFAVE PQEATGNRAI VWPRGKVLGG SSAINGLLYI RGQHADFDDW AGVAGATGWS
FREVLPYFKK SERYQGGESE YHGASGELCV SDLRNEHPYC AAWIEAGVQA GHGRNPDFNG
ARTEGLGAYQ LTLRGHWRCD AATAFLAPVR ARPNLTVLTG VHVMRVLIEQ GRAVGVEWLQ
DGELRNARAD AEVLLAAGAL QSPQLLQLSG VGPAGLLRGH GIAVQADAPQ VGENLQDHYQ
ARVIVRLRKR MSLNDQVRNP LALATMGAQW LFRQRGPLTV GAGQVGGMVC SPHAEGGRPD
VLFNVMPLSV DKPGDPLHRF SGFSASATQC RPLSRGTVRI RSADPLAPPR IVSNYLSDPH
DAKVLVAGLK MLREIYRQPA FRDLVTDDEY LPGREAADDA ALEAFARHKG GTVFHPAGTC
RMGGDALSVV DPQLRVRGIE RLRVIDAAVM PAMVSTNTNA ASIMIAEKGA ALVREGK
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