Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5506 |
Symbol | |
ID | 7975363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 209093 |
End bp | 209974 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796093 |
Product | SMP-30/Gluconolaconase/LRE domain protein |
Protein accession | YP_002947367 |
Protein GI | 239820182 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3386] Gluconolactonase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGTGC AGATCACCAG AATCGGAACC ACCCGGGACC AGCTGGGCGA GAGCCCTTGC TGGGATGCCG ACGCGCAGGC GCTGAACTGG ATCGACGCGC TGGGCGGCGC GCTGTGGCGG CTGCAAGCCG GAGCCGGGCA GGCCGAGCGG CATGAGCTGC CGGCGCCCGT GGGCTCGATT GCGCCCTGCC GCGGCGCGGC CGTGGTGGTG GCGCTGCGCA ACAGCTTCGC GCGCTACGAC TTCGCCACCC GCACGCTGGA GCCGCTGGCC CGCATCCCGG TGGATCACCC GAAGGTGCGC TTCAACGACG GCAAGTGCGA CGCGGCTGGC CATTTCCTGG CCGGCACCAT GCACGTCGAC CGCCAGCCTG GCGAGGCGGT CATCGGAGGG CTCTACCGGC TGCGCACCGA TCGCCGGGTG GAGCAGCTGG CCGACGACAT CGGCTTTGCC AACGGACCCT GCTTCAGCCC CGACGGCCGC GTGCTGTACC TGGCCGACAG CCTGGAACGC ACCATCTGGG CCTGGGACTA CGACCCCGAC GGCCCGCTGC GCCACAAGCG CATGTTCGCG AGGACGCATG AATTCGATTC GGGCCCCGAT GGCGCGACGG TCGATGCGGA GGGCTTCGTC TGGACCGTAC TGACCCGCGC CGCCAAGCTC GCTCGCCTTG CGCCCGACGG CAGGCTGGAG CGGCTGATCG ATCTGCCTGC GAGCTATCCG ACGAGCATCT GCTTCGGCGG GCCGCACCTG GACTGCATCT ACCTGACCAG CATTTTCCGC AGCGCGCGCC TGGAAGGGAA CAAGACGCAC GATGGCGGGC TGTTCCGGAT CGAAGGGCTG CCTGCGCCGG GGCGCCTGCC TGATCGATTT GGAGGCTGCT AG
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Protein sequence | MTVQITRIGT TRDQLGESPC WDADAQALNW IDALGGALWR LQAGAGQAER HELPAPVGSI APCRGAAVVV ALRNSFARYD FATRTLEPLA RIPVDHPKVR FNDGKCDAAG HFLAGTMHVD RQPGEAVIGG LYRLRTDRRV EQLADDIGFA NGPCFSPDGR VLYLADSLER TIWAWDYDPD GPLRHKRMFA RTHEFDSGPD GATVDAEGFV WTVLTRAAKL ARLAPDGRLE RLIDLPASYP TSICFGGPHL DCIYLTSIFR SARLEGNKTH DGGLFRIEGL PAPGRLPDRF GGC
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