Gene Vapar_5401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5401 
Symbol 
ID7975862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp102814 
End bp105534 
Gene Length2721 bp 
Protein Length906 aa 
Translation table11 
GC content68% 
IMG OID644795990 
Producttranscriptional regulator, winged helix family 
Protein accessionYP_002947264 
Protein GI239820079 
COG category[R] General function prediction only 
COG ID[COG3903] Predicted ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGCGC AGTCGGAGGA GCCATCTGAC CTGGCGTCGG CCGAAGTCCG GTGGTACTTC 
GGCGTGTTCG TTGTCTGGGA GGCGCAGCGC CGGTTCGAGC GCTCCGGCGA GCCCGTGCGG
CTGGGGCCAC GCTCTTTCGA TCTGCTGCTG CAGCTGATCA AGCGGGCCGG CGAATTCGTG
GGCAAGGATG ACCTGCTCGC GACGGTCTGG GGTGGCGTCG TCGTCGAAGA GGCCAGCGTG
CGCGTCCATA TGTCCACGCT TCGCAAGGCG CTGGGCGAGC CCGGCGAGAG CGACGAATGC
AAGGAGTGGA TCTCCAATGT TCCGCTGCGC GGCTATCGCT TCAATGGACG TGTCCGGCGC
GAGGCGCCCG GCATCCCGGC CAGGCCCGCA GCCCCGCTGG CCGACCCCGG TTTCACCCCA
CTGCCGGTTC GGCTGACCGA ACTCGTCGGC CGCGAAGCCG ATGTGGCGAG CGTTCTCGAA
GCGCTCGATA CCCACCGGCT GGTCACGATC GTGGGCACGG GTGGCATCGG CAAGACCCGT
CTCGCGATCC ACGCCGCGGA GAGCCATCAG CACAGGCACG GCGCGGAGAT CGCCTTTGTC
GATCTGTCGT CGCTGATCTC CCAGGACCAC GTGCTCGGCA CCCTGGCGCG CGCCGTGGGG
GTGCCCGCCG ACCTGCCCGA CATCGTCGGC GCCATCACGC AACGCCTGAT GGCGCGCGCT
GTGCTCCTGT TGATCGACAA CTGCGAGCAT GTGGTGGACT CCCTGGCGCT GCCGATCGCC
GGCTTGCTTT CCGTGCTGCC CGGCCTGCGC ATCCTGGCGA CGAGCCGCGA GGCGCTGCGC
GTGACGGGCG AGTACGTCTT TCGGCTGCCG GCGCTCGCAA TTCCGGACGC CGAGCAGATC
TCGCTCACGC AGGCGCTGCA CTGGCCCTCC GTGGAATTGC TCGTCGAGCG CGCCAAGGCC
GCGGGTGCGG GTGCGTTCGA TGAATCGCAT GGCCCCCTGC TGGCCCAGAT CACCAGGCAG
GTCGACGGCA TCCCTCTGGC CATCGAACTG GTGGCCGCGC GCCTGGGCGT GCAGCCGGTC
GTCGATCTGG CGCGCAGGCT GGACGACCAC ATGCGCCTCT ATGCCTTCAG CCGCGCCGCG
CTCGCACGGC ACCGAACGCT CGCCGCGGCG CTCGACTGGA GCATCGCGCT TCTGAGCGAT
ACAGAGCTGC GGCTCTTTCG CTGGTTGTCG GTGTTTCGGG GGCGCTTCGA TGTGGAAGCC
GCGCTAGGCG TGAGCGCCGG CGGCATGGAC GCCGAGGTGG CATTCGACGC ACTGATCTCG
CTGGTCAACA AGTCGCTTGT CTTCTTCGAC AGCAACGACG CTGTCGCGCC CTACAAGCTT
CTGGACACGA CGCGAAGCTA TGCAGCTGCG CTTCTCGCCC AGAGCGATGA ACGGCCGGCA
TTGCTGCGGC GCCATGCGGT CCTCATGCGC GATCTCATGA AGGCAGCGGC GGCGGAACTC
TCCGACCTGA CCAAGCAGGC CTGGGCCGGC CGTTATGCAC ACCGCCTGGA CGACGTGCGC
TTTGCGCTCG AAGTCTGCCT GACGCAGCAG CCCGACGCGA AGATGGCCGC CTCGCTGGTG
ACGGCTTCCG CGCCGTTGTG GTTTCACCTG GCCCAGGTCG TCGAATATCG CGACCGGGTC
TCCGCGGCGC TGGCGCTGGT TGATCGTCAA CCCACGCGCG ACACGGAAAC GGCGACCTGG
CTGAACACCG CGCTGGTCAG CGCCCTGCTC CACACCGGCA GGTCCACACC CGAGTTGGGT
GCCGCCGCAG ACCAGGCCCT GGCCGGCGCG CTTGCCGTCA AGATCCCCGT ACTGGAACTG
CAAGCCCGTT GGGGGCGGTG CACGCACGAC ATGTTCCGCG GCGAGTATTC GGCGGCGCTG
GACCAGGCGC ACACGCTGAT GGCGGCAGCG CGATCCTGGT CCGACCCCGC CGCACTCAAT
CTCGCGCACC GCGTGATGGC GATGGCCAAC CACTTTTGCG GCCACTTCGA TGTGGCGAGG
ATGCACAGCG AAGCTTCCGT GCGCGTTGGT GGCGGCCTCG GCCATGCCCG GGCCAACATG
GTGGGGGTCA ACGCCATCGT TGCGGCGAAA GCCATGCTGA GCCGAACCCT CTGGGTGCAA
GGGGAAACGG CCCGGGCCCT GGAAGAAGCC AGCGACGCGG TGGACCGAGC GCAAGCGGCC
GGAAAATCCG TCTCCCTGTG TTCCGCGCTG TATGGTGCCT GCCCGGTCGC GCTGTGGGCC
GGCGAACTCG AGCTTGCCGC CCAATGGATT CACTTGATGA CGGACGAAGC GCGGCGCAAG
GGCCTGGTGG GCTGGCTGCG CTATGCCGAG TGGTTCTCCC AGGGCCTGCA GTTGGGCATC
GCGCCGGACC GGGATCTTTA CGTGCGTGAA GTGGCCGGCC AGCTCGCGAC CTATGACGCA
CCCCACAGGG AGATGCTCGC GACCTTCTGC ATCGACTGGG TCGACGACGA GATGATCGAG
CGCGTCTCGC GCGGAGAGAG TCGTTGGGTC GCCGCCGAGG TCTGGCGCGC TGCCGGCTGG
CGCGCGGAGC AGAACGCTGC ACCCGACGAG GCGGACGCTT TCTACCTCCG GGCAACGGAA
ACTGCGAGGC AACAAGGCGC CGTCGCCTGG GAAAAGCGCG CCGCGGTCCG CCGGCCCGGC
GCACGGCCGG TTCATCGCTG A
 
Protein sequence
MQAQSEEPSD LASAEVRWYF GVFVVWEAQR RFERSGEPVR LGPRSFDLLL QLIKRAGEFV 
GKDDLLATVW GGVVVEEASV RVHMSTLRKA LGEPGESDEC KEWISNVPLR GYRFNGRVRR
EAPGIPARPA APLADPGFTP LPVRLTELVG READVASVLE ALDTHRLVTI VGTGGIGKTR
LAIHAAESHQ HRHGAEIAFV DLSSLISQDH VLGTLARAVG VPADLPDIVG AITQRLMARA
VLLLIDNCEH VVDSLALPIA GLLSVLPGLR ILATSREALR VTGEYVFRLP ALAIPDAEQI
SLTQALHWPS VELLVERAKA AGAGAFDESH GPLLAQITRQ VDGIPLAIEL VAARLGVQPV
VDLARRLDDH MRLYAFSRAA LARHRTLAAA LDWSIALLSD TELRLFRWLS VFRGRFDVEA
ALGVSAGGMD AEVAFDALIS LVNKSLVFFD SNDAVAPYKL LDTTRSYAAA LLAQSDERPA
LLRRHAVLMR DLMKAAAAEL SDLTKQAWAG RYAHRLDDVR FALEVCLTQQ PDAKMAASLV
TASAPLWFHL AQVVEYRDRV SAALALVDRQ PTRDTETATW LNTALVSALL HTGRSTPELG
AAADQALAGA LAVKIPVLEL QARWGRCTHD MFRGEYSAAL DQAHTLMAAA RSWSDPAALN
LAHRVMAMAN HFCGHFDVAR MHSEASVRVG GGLGHARANM VGVNAIVAAK AMLSRTLWVQ
GETARALEEA SDAVDRAQAA GKSVSLCSAL YGACPVALWA GELELAAQWI HLMTDEARRK
GLVGWLRYAE WFSQGLQLGI APDRDLYVRE VAGQLATYDA PHREMLATFC IDWVDDEMIE
RVSRGESRWV AAEVWRAAGW RAEQNAAPDE ADAFYLRATE TARQQGAVAW EKRAAVRRPG
ARPVHR