Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5401 |
Symbol | |
ID | 7975862 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 102814 |
End bp | 105534 |
Gene Length | 2721 bp |
Protein Length | 906 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795990 |
Product | transcriptional regulator, winged helix family |
Protein accession | YP_002947264 |
Protein GI | 239820079 |
COG category | [R] General function prediction only |
COG ID | [COG3903] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGCGC AGTCGGAGGA GCCATCTGAC CTGGCGTCGG CCGAAGTCCG GTGGTACTTC GGCGTGTTCG TTGTCTGGGA GGCGCAGCGC CGGTTCGAGC GCTCCGGCGA GCCCGTGCGG CTGGGGCCAC GCTCTTTCGA TCTGCTGCTG CAGCTGATCA AGCGGGCCGG CGAATTCGTG GGCAAGGATG ACCTGCTCGC GACGGTCTGG GGTGGCGTCG TCGTCGAAGA GGCCAGCGTG CGCGTCCATA TGTCCACGCT TCGCAAGGCG CTGGGCGAGC CCGGCGAGAG CGACGAATGC AAGGAGTGGA TCTCCAATGT TCCGCTGCGC GGCTATCGCT TCAATGGACG TGTCCGGCGC GAGGCGCCCG GCATCCCGGC CAGGCCCGCA GCCCCGCTGG CCGACCCCGG TTTCACCCCA CTGCCGGTTC GGCTGACCGA ACTCGTCGGC CGCGAAGCCG ATGTGGCGAG CGTTCTCGAA GCGCTCGATA CCCACCGGCT GGTCACGATC GTGGGCACGG GTGGCATCGG CAAGACCCGT CTCGCGATCC ACGCCGCGGA GAGCCATCAG CACAGGCACG GCGCGGAGAT CGCCTTTGTC GATCTGTCGT CGCTGATCTC CCAGGACCAC GTGCTCGGCA CCCTGGCGCG CGCCGTGGGG GTGCCCGCCG ACCTGCCCGA CATCGTCGGC GCCATCACGC AACGCCTGAT GGCGCGCGCT GTGCTCCTGT TGATCGACAA CTGCGAGCAT GTGGTGGACT CCCTGGCGCT GCCGATCGCC GGCTTGCTTT CCGTGCTGCC CGGCCTGCGC ATCCTGGCGA CGAGCCGCGA GGCGCTGCGC GTGACGGGCG AGTACGTCTT TCGGCTGCCG GCGCTCGCAA TTCCGGACGC CGAGCAGATC TCGCTCACGC AGGCGCTGCA CTGGCCCTCC GTGGAATTGC TCGTCGAGCG CGCCAAGGCC GCGGGTGCGG GTGCGTTCGA TGAATCGCAT GGCCCCCTGC TGGCCCAGAT CACCAGGCAG GTCGACGGCA TCCCTCTGGC CATCGAACTG GTGGCCGCGC GCCTGGGCGT GCAGCCGGTC GTCGATCTGG CGCGCAGGCT GGACGACCAC ATGCGCCTCT ATGCCTTCAG CCGCGCCGCG CTCGCACGGC ACCGAACGCT CGCCGCGGCG CTCGACTGGA GCATCGCGCT TCTGAGCGAT ACAGAGCTGC GGCTCTTTCG CTGGTTGTCG GTGTTTCGGG GGCGCTTCGA TGTGGAAGCC GCGCTAGGCG TGAGCGCCGG CGGCATGGAC GCCGAGGTGG CATTCGACGC ACTGATCTCG CTGGTCAACA AGTCGCTTGT CTTCTTCGAC AGCAACGACG CTGTCGCGCC CTACAAGCTT CTGGACACGA CGCGAAGCTA TGCAGCTGCG CTTCTCGCCC AGAGCGATGA ACGGCCGGCA TTGCTGCGGC GCCATGCGGT CCTCATGCGC GATCTCATGA AGGCAGCGGC GGCGGAACTC TCCGACCTGA CCAAGCAGGC CTGGGCCGGC CGTTATGCAC ACCGCCTGGA CGACGTGCGC TTTGCGCTCG AAGTCTGCCT GACGCAGCAG CCCGACGCGA AGATGGCCGC CTCGCTGGTG ACGGCTTCCG CGCCGTTGTG GTTTCACCTG GCCCAGGTCG TCGAATATCG CGACCGGGTC TCCGCGGCGC TGGCGCTGGT TGATCGTCAA CCCACGCGCG ACACGGAAAC GGCGACCTGG CTGAACACCG CGCTGGTCAG CGCCCTGCTC CACACCGGCA GGTCCACACC CGAGTTGGGT GCCGCCGCAG ACCAGGCCCT GGCCGGCGCG CTTGCCGTCA AGATCCCCGT ACTGGAACTG CAAGCCCGTT GGGGGCGGTG CACGCACGAC ATGTTCCGCG GCGAGTATTC GGCGGCGCTG GACCAGGCGC ACACGCTGAT GGCGGCAGCG CGATCCTGGT CCGACCCCGC CGCACTCAAT CTCGCGCACC GCGTGATGGC GATGGCCAAC CACTTTTGCG GCCACTTCGA TGTGGCGAGG ATGCACAGCG AAGCTTCCGT GCGCGTTGGT GGCGGCCTCG GCCATGCCCG GGCCAACATG GTGGGGGTCA ACGCCATCGT TGCGGCGAAA GCCATGCTGA GCCGAACCCT CTGGGTGCAA GGGGAAACGG CCCGGGCCCT GGAAGAAGCC AGCGACGCGG TGGACCGAGC GCAAGCGGCC GGAAAATCCG TCTCCCTGTG TTCCGCGCTG TATGGTGCCT GCCCGGTCGC GCTGTGGGCC GGCGAACTCG AGCTTGCCGC CCAATGGATT CACTTGATGA CGGACGAAGC GCGGCGCAAG GGCCTGGTGG GCTGGCTGCG CTATGCCGAG TGGTTCTCCC AGGGCCTGCA GTTGGGCATC GCGCCGGACC GGGATCTTTA CGTGCGTGAA GTGGCCGGCC AGCTCGCGAC CTATGACGCA CCCCACAGGG AGATGCTCGC GACCTTCTGC ATCGACTGGG TCGACGACGA GATGATCGAG CGCGTCTCGC GCGGAGAGAG TCGTTGGGTC GCCGCCGAGG TCTGGCGCGC TGCCGGCTGG CGCGCGGAGC AGAACGCTGC ACCCGACGAG GCGGACGCTT TCTACCTCCG GGCAACGGAA ACTGCGAGGC AACAAGGCGC CGTCGCCTGG GAAAAGCGCG CCGCGGTCCG CCGGCCCGGC GCACGGCCGG TTCATCGCTG A
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Protein sequence | MQAQSEEPSD LASAEVRWYF GVFVVWEAQR RFERSGEPVR LGPRSFDLLL QLIKRAGEFV GKDDLLATVW GGVVVEEASV RVHMSTLRKA LGEPGESDEC KEWISNVPLR GYRFNGRVRR EAPGIPARPA APLADPGFTP LPVRLTELVG READVASVLE ALDTHRLVTI VGTGGIGKTR LAIHAAESHQ HRHGAEIAFV DLSSLISQDH VLGTLARAVG VPADLPDIVG AITQRLMARA VLLLIDNCEH VVDSLALPIA GLLSVLPGLR ILATSREALR VTGEYVFRLP ALAIPDAEQI SLTQALHWPS VELLVERAKA AGAGAFDESH GPLLAQITRQ VDGIPLAIEL VAARLGVQPV VDLARRLDDH MRLYAFSRAA LARHRTLAAA LDWSIALLSD TELRLFRWLS VFRGRFDVEA ALGVSAGGMD AEVAFDALIS LVNKSLVFFD SNDAVAPYKL LDTTRSYAAA LLAQSDERPA LLRRHAVLMR DLMKAAAAEL SDLTKQAWAG RYAHRLDDVR FALEVCLTQQ PDAKMAASLV TASAPLWFHL AQVVEYRDRV SAALALVDRQ PTRDTETATW LNTALVSALL HTGRSTPELG AAADQALAGA LAVKIPVLEL QARWGRCTHD MFRGEYSAAL DQAHTLMAAA RSWSDPAALN LAHRVMAMAN HFCGHFDVAR MHSEASVRVG GGLGHARANM VGVNAIVAAK AMLSRTLWVQ GETARALEEA SDAVDRAQAA GKSVSLCSAL YGACPVALWA GELELAAQWI HLMTDEARRK GLVGWLRYAE WFSQGLQLGI APDRDLYVRE VAGQLATYDA PHREMLATFC IDWVDDEMIE RVSRGESRWV AAEVWRAAGW RAEQNAAPDE ADAFYLRATE TARQQGAVAW EKRAAVRRPG ARPVHR
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