| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5388 |
|---|
| Symbol | |
|---|
| ID | 7975849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 93958 |
|---|
| End bp | 94857 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795982 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002947256 |
|---|
| Protein GI | 239820071 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGA CGACGCGGCA GATGCGGGCA TTCCGGCAGG TGGCTCGCAC CGGCAGCTTC
ACCCGGGCGG CGGAGCTGAC GCACATGACC CAGGCCGGGC TGAGCATCCT CATCCGCGAG
GTGGAGCGGC AGCTCGGTGC CCGGCTGTTC GACCGCACGA CGCGCGCGGT CCAGCTGACG
GCAGCCGGCC GGCGGCTGGC CCCGGTGGTC GAGCGCGTGC TCGGGGAGCT CGACAGCGTG
ACCCAGGAGA TCGGCATCCT GGGCGATGCG GCGCGCCAGA ACCTGCGCAT TGCCGCCACG
CCGCTGGTGT CATCCCAGCT GCTGCCGCAA TTGCTGGCGA TGTTCAGGCA GGCGCAGCCC
CACGTTCAGG TGCACTTGCT CGATGCCGCG CTGGAAGACG TGGAAAGGGC GGTGCTGGCG
GACGAGGCGG ACCTGGGGCT CGGCTTCTTC TTCAAGGCCG CGCCGGGGCT GGTGCGCACC
GAAGTTGCCA GCTTCCAGCT CATGCGGGTG ACCGCTGCGG AAGGTGCGCA GAGGAGAGTG
GGGCGGGTTC CGTGGTCGGC CTTGAAGTCG GCGCAGCTGA TCGGCTTGCC CGCCGGCAAT
CCGATCCAGA AGGTCATCGA TGCGCAGCTC GGCAAGCTGA ACATCGTGAA CCCGGAAGGC
CGGTCGGTGA GCTTCTTCGG CACCTTGATC TCCATGGTGG AAGCAGGCTT TGGCACGGCC
GTGATGCCCA CGTTCGCCAT GGCTGCATGC AAGCGCCATC AGGTCAATGC AGACCTGCTG
AGCTCACCCA AGGTCGAGCT CGCGTTCTAC AGCATCACGA AGCGGGGCAC GAAGGATTCG
GAGGCGATTG GCGCCTTCGT CGAATTGCTC AAGCTTCGGC TGCCTTTCAT GTCGCGGTGA
|
|---|
| Protein sequence | MNLTTRQMRA FRQVARTGSF TRAAELTHMT QAGLSILIRE VERQLGARLF DRTTRAVQLT
AAGRRLAPVV ERVLGELDSV TQEIGILGDA ARQNLRIAAT PLVSSQLLPQ LLAMFRQAQP
HVQVHLLDAA LEDVERAVLA DEADLGLGFF FKAAPGLVRT EVASFQLMRV TAAEGAQRRV
GRVPWSALKS AQLIGLPAGN PIQKVIDAQL GKLNIVNPEG RSVSFFGTLI SMVEAGFGTA
VMPTFAMAAC KRHQVNADLL SSPKVELAFY SITKRGTKDS EAIGAFVELL KLRLPFMSR
|
|---|
| |