| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5379 |
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| Symbol | |
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| ID | 7975840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 84737 |
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| End bp | 85924 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795973 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002947247 |
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| Protein GI | 239820062 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.115103 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCAGG CCACGCCCCG ATCCGTCTTG TGCGCGCTCA CCGTCCTGGT GGGCGCGCTG
GCACTGCCGT CACAGGCGCA GACCGTGAAG GTCGGCCTGG CGATGGACCT GTCCGGCCCC
TTTGCCGTCG GCGGCGCCGA GGCCAAGGCC GGCTTCGCCG TTGCGATGAA GCAGCTGGGC
GGCAAGCTCG GCGGCGTGCC GGTGGAATTT GTCGAGGCCG ACACGGCAGG CAACCCCGAG
ATGGCGCGCC AGGTGGTCGA GCGCATGCTG CTGCGCGACA AGATCGACCT GTTCACCGGG
CCCGTCGGCT CGTCCGTCGC GCTGGCCGTC GGCCCGCCGC TCTTCGCGGC CAGGGTGCCC
TACCTGTCGA GCAACACCGG CCCGAGCGAC TATTCGGGCG CGCGCTGCAA CCCGTACTTC
TTCGGTGCCT CGTACCCGAA CGATGCGTAC TACGAATCGG CCGGCAAGTT CGCCTCGGAC
AAGGGCTTCA AGAAGGTCGC GATGATCGCG CCCAGCTATC CCGGCGGCAA GGACGCCATC
AACGGCTTCA AGCACACCTT CAAGGGCAGC GTGAGCGACG AGCTGTACAC CAAGCTCGGG
CAGCTCGACT ACTCGGCGGA GCTGGCGCAG ATTCGTGCGT CGAAGCCCGA TGCGCTGTAC
TTCTTCCTGC CCGGCGCCAT GGGCGTGAGC TTCATCAAGC AGTTCGTCGG CGCGGGGCTG
TCGAAGGACG TGGCGCTGAT CTCCACCGCG TTCTCGGCCG ACGAGGACAT GATCCCCGCC
GTCGGCGAGC CGATGCTGGG CCTGTTCAAT ACCGCGCACT GGTCGTTCGA CCTCGACAAC
GCGGCCAACC AGCGCTTCGT GGCGGCGTTC CGCCAGCAGA ACAACGGGCG CAACCCGTCC
TTCTATGCCG GCCAGGCCTA CGACGTGCTG ATGGCGATGG ATGCGGCCGT GCGCGACGTC
GGCGGCAAGC TGGCCGACAA GCCCGCGCTG CTCAAGGCGA TCAAGGCGGC CAACTACAAG
TCGGTGCGCG GCGATTTCCG CTATGGCCCG AACAACTTCC CGATCCAGAA CTACTACCTG
CGCGTGATCG CCAAGGACGC GAACGGGCGC ATCGCCAACA AGGTGATCGG CACCGTGCTG
GAGCGCTACC AGGACCGGAC CGCCGCCCAG TGCGCGATGA AGTCCTGA
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| Protein sequence | MPQATPRSVL CALTVLVGAL ALPSQAQTVK VGLAMDLSGP FAVGGAEAKA GFAVAMKQLG
GKLGGVPVEF VEADTAGNPE MARQVVERML LRDKIDLFTG PVGSSVALAV GPPLFAARVP
YLSSNTGPSD YSGARCNPYF FGASYPNDAY YESAGKFASD KGFKKVAMIA PSYPGGKDAI
NGFKHTFKGS VSDELYTKLG QLDYSAELAQ IRASKPDALY FFLPGAMGVS FIKQFVGAGL
SKDVALISTA FSADEDMIPA VGEPMLGLFN TAHWSFDLDN AANQRFVAAF RQQNNGRNPS
FYAGQAYDVL MAMDAAVRDV GGKLADKPAL LKAIKAANYK SVRGDFRYGP NNFPIQNYYL
RVIAKDANGR IANKVIGTVL ERYQDRTAAQ CAMKS
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