| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5378 |
|---|
| Symbol | |
|---|
| ID | 7975839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 83698 |
|---|
| End bp | 84723 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795972 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002947246 |
|---|
| Protein GI | 239820061 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0235204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGT GGTCGAACGA GCAGCTTTCC CCCTTGTACG AGAGAGAACT CTTCCGTTCG
CATGATGCAG AGGAGACGCA TGCGCGTGTC TCCCGCGAGC TCAAGCCGCA CCGCAGCGTA
TGGGGCCGCG GCGACGTCGA CGCCATCTTC TGCCGCGCGG AGCTGAGCGC ACTGTCGTTG
TGCATCCTGC GCTACGGCTG CGACGTCGAC ATCGAGCCCG ACGCGCTCGG CAACTTCGTG
CTGGTGCAGA TGCCGCTGCG CGGCCATGCC GACGTCCATA CCGGCGGGCA CACCCTGCAG
ATCCATCCTG GCCAGGGCGC GGTCATTTCC GCCCACAAGC CGGTGCGGCT GCACTGGCAT
GCCGACTGCG AACAGCTGAT ATTGAAAATC GAGCTCAGCC GGCTGCAGGA GGTGGCACGC
CATGCCTTCG CCTTGCGCGG CACCGACGAC GTGGGCGAGA TCGATTTCGC GATGCCCTTT
TGCCTGGACG ACGCCGCCGG CACGCAGTGG TGCCGCATGG TGGCCGGCCT GGCCTCGCTG
CTGCCCTCGG GCGACCTGGG AACCTACGAC CCGCGGTGGA TGGCGCACTG CGAAGACAAC
CTGATGCTCT ACCTGCTGTG CCACCGGCCG AATTCAGCCC TGCAACGGCA TGCCGCCGTG
CGGCGCGGCT CCGAGGAAGC CGGCCTGCGG CAGCTGCGGC GGGCCGAGGA GTTCATGCGC
GAGCGGCTCG ACACGCTGCT GTCGCTCGAA GACGTGGCGC AGGCCACGGG CGTCACGCGC
CGCAGCCTCG CCTTGCTCTT CAAGCGCTAT CGCGACCTCT CGCCCGGCGA GGTGCTGCGC
AACATGCGGC TGGACGCCGC GCACGCGCAG CTGGCGCGGC ACGACGGTGC CAGCGTCACC
GAGGTGGCGC TGAGCTGCGG CTTCTCGCAC CTGAGCCGCT TTGCCGCCTG CTACCGCGAG
CGCTTCGGCC AGCTGCCGCG CGACACCTCC CGCGATCCCG CACCGCTGCC CGCCGCGCGG
CACTGA
|
|---|
| Protein sequence | MDAWSNEQLS PLYERELFRS HDAEETHARV SRELKPHRSV WGRGDVDAIF CRAELSALSL
CILRYGCDVD IEPDALGNFV LVQMPLRGHA DVHTGGHTLQ IHPGQGAVIS AHKPVRLHWH
ADCEQLILKI ELSRLQEVAR HAFALRGTDD VGEIDFAMPF CLDDAAGTQW CRMVAGLASL
LPSGDLGTYD PRWMAHCEDN LMLYLLCHRP NSALQRHAAV RRGSEEAGLR QLRRAEEFMR
ERLDTLLSLE DVAQATGVTR RSLALLFKRY RDLSPGEVLR NMRLDAAHAQ LARHDGASVT
EVALSCGFSH LSRFAACYRE RFGQLPRDTS RDPAPLPAAR H
|
|---|
| |