| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5364 |
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| Symbol | |
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| ID | 7975825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 71099 |
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| End bp | 71911 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795958 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_002947232 |
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| Protein GI | 239820047 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.778802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAGTT CATCAGTCGT TGTCGTGACG GGCGCGTCCT CGGGCATCGG GCGCGCCGCT
GCAGAAATGT TCGTGGCGCG CGGCTGCCGG GTGTTCGGCA CTGCGCGCGA CCTGCGCAGG
GCACCCGCGC TGCCCGGCGT CGAGTTCGTC GAGATGGACG TCCGCGAAGA AGGCTCGGTC
CAGGCGGGCA TCGACTCCAT CATCGCGCAG GCCACGCGCG TCGACGTGCT GGTCAACAAC
GCGGGAATGA TGATGATCGG CGCGGTCGAG GAAACTTCGA CGGCCGAGGC CGCGGAGCTG
TTCGACACCA ACGTCTTCGG CCTGCTTCGC GTGACGCGTG CCGTGCTGCC GTACATGCGC
CGGCAGCGCC GCGGGCGCAT CGTCAACGTG AGTTCGGTGC TCGGTGTGCT TCCGGCGCCG
TACATGGCGC TCTATGCGGC CACCAAGCAT GCGGTGGAAG GGCTGTCGGA GTCGCTGGAC
CACGAGGTGC GCCAGTTCGG CATTCGCGCG ACCTTGGTGC AGCCGGCCTT CACCCGGACC
AACCTCGATG CCAACGCGCC GCGCACCAAG GCGCGGATCG CGGGCTATGA CCGCGAACGC
GACCTGGTCG CGCTCTCCGT GGCCGACAGC GTGGCCGGCG CGCCCGAGCC GCACGGCGTG
GCGGGCACCA TCGTCGAGGC GGCGCTCGGC CCCTGGCGCA TGCGCTGCAC GCCGCCGGGG
GAGGCGTCCT TGCTGACGAA GCTGCGCCGC TTCATGCCCG CGGGACCGGT GGACGCGAGC
CTCAGGAAAA AACTCGGGCT CGGTTCCTCC TGA
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| Protein sequence | MSSSSVVVVT GASSGIGRAA AEMFVARGCR VFGTARDLRR APALPGVEFV EMDVREEGSV
QAGIDSIIAQ ATRVDVLVNN AGMMMIGAVE ETSTAEAAEL FDTNVFGLLR VTRAVLPYMR
RQRRGRIVNV SSVLGVLPAP YMALYAATKH AVEGLSESLD HEVRQFGIRA TLVQPAFTRT
NLDANAPRTK ARIAGYDRER DLVALSVADS VAGAPEPHGV AGTIVEAALG PWRMRCTPPG
EASLLTKLRR FMPAGPVDAS LRKKLGLGSS
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