Gene Vapar_5361 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5361 
Symbol 
ID7975822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp66166 
End bp66783 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content66% 
IMG OID644795955 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002947229 
Protein GI239820044 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.296046 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAACG CAACCTCTTC CCCGCCGGCC GCGCGGGGGC CGGCCGACCA TGACGTGCGC 
GCGCAGATCG TCGTGGCGGC CACCGAGCAC TTCAGCCAGT ACGGCTACGA GAAGACCACG 
GTTTCCGACC TGGCCAAGGC CATCGGCTTC TCCAAGGCCT ACATCTACAA GTTCTTCGAG 
TCCAAGCAGG CGATCGGCGA ATTGATCTGC GCGAACTGCC TGCGCGAGAT CCAGCTGGAG 
ATCCGCGCCG CGGTCGACGG GGCCGGCAGC CCGCCCGAGA AGCTGCGCCG CATGTTCAAG 
GCCATCGTGG ATTCGGGCCT TCGGCTGTTC TTCCAGGACC GCAAGCTCTA CGAGATCGCC 
ATTTCGGCCG CCAGCGAGCG CTGGCCGTCG GCCATCGCCC ATGAAGAGTG CATCCGGCAG 
ATGCTGCTCG AATTGCTGAG GCAGGGGCGC GAGTCCGGCG ACTTCGAGCG CAAGACGCCG 
ATCGACGAGA CGGCGGCGGC CATCTACCTG GTCATGCACC CTTACGTCAA CCCCGTGATC 
CTGCAGCTCA GCTCCAGTTA CACGGACCAG GCGCCGGCCC AGCTGTCGGG CCTGGTGCTG 
CGCAGTTTGT CGCCGTAG
 
Protein sequence
MNNATSSPPA ARGPADHDVR AQIVVAATEH FSQYGYEKTT VSDLAKAIGF SKAYIYKFFE 
SKQAIGELIC ANCLREIQLE IRAAVDGAGS PPEKLRRMFK AIVDSGLRLF FQDRKLYEIA 
ISAASERWPS AIAHEECIRQ MLLELLRQGR ESGDFERKTP IDETAAAIYL VMHPYVNPVI 
LQLSSSYTDQ APAQLSGLVL RSLSP