| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5354 |
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| Symbol | |
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| ID | 7975815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 58410 |
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| End bp | 59150 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795948 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947222 |
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| Protein GI | 239820037 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.495414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCCAT CAGCCAACCA CCGCGGCGTG GCTCTCGTCG TCGGCGCGGG CGACGCCACA
GGCAGCGCGA TCGGCGCGCG CTTCGCCCGC GAGGGCTATG TCGCGTGCCT CACGCGGCGA
TCGGCCGACA AGCTGGAGCC GGCCGTCGAG CGCATCCGCG CGGCCGGCGG CCAGGCCTTC
GGCTACGGCA GCGATGCGCG CAAGGAGGAG GAGGTCGTGG CCCTCGTCGA CCAGATCGAG
AAGGAGCGCG GCCCGATCGA GGTGATGGTG TTCAACATCG GTGCCAACGT GCCCAGCAGC
ATCCTGGAGG AAACCGGGCG CAAGTACATG AAGATCTGGG AGATGGCCGC CTTCAGCGCC
TTCCTGAATG CGCGCGAGGT CGCCCGAAGG ATGGTCGAGC GCGGGCGCGG CACGATTCTT
TTCACCGGCG CGACGGCCGG CATCCGCGGC TCGGCGAAGT TCGCGGCCTT TGCCGGCGCC
AAGCATGCGC TGCGCGCCCT GGCCCAGAGC ATGGCGCGCG AGCTCGGCCC GCGCGGCATC
CACGTGGCCC ACATCGTGGT CGACGGCGCA ATCGACACGG AGTTCATCCG CAGCAACTTC
CCCGAACGCT ATGCGCTGAA GGAGCAGGGC GGCATCCTGA ACCCCGAGCA CATCGCGGAG
AACTACTGGT ACCTGCACAC CCAGCCCCGG GACGCCTGGA CCTTCGAGAT GGACCTGCGC
CCCTACATGG AAACCTGGTG A
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| Protein sequence | MDPSANHRGV ALVVGAGDAT GSAIGARFAR EGYVACLTRR SADKLEPAVE RIRAAGGQAF
GYGSDARKEE EVVALVDQIE KERGPIEVMV FNIGANVPSS ILEETGRKYM KIWEMAAFSA
FLNAREVARR MVERGRGTIL FTGATAGIRG SAKFAAFAGA KHALRALAQS MARELGPRGI
HVAHIVVDGA IDTEFIRSNF PERYALKEQG GILNPEHIAE NYWYLHTQPR DAWTFEMDLR
PYMETW
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