| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5352 |
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| Symbol | |
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| ID | 7975813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 55991 |
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| End bp | 57631 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795946 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002947220 |
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| Protein GI | 239820035 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.89737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGATCAAA GAATCTGGCA TGCGTCCTAC CCGGCAGGAC TGCCCCGCGA GCTCGTGTAC
GGCGAGCACG ACACCCTCGC CACCCTGTTC GAAGGCGCCT TCGCTCGCAA CGCCAGCCGG
CCGGCCGTGA CCTGCAACGG CGAATCGCTG AGCTTCGCCG AGCTCGAACA AGCATCGGCT
CGCTTTGCGG CATTCCTGCA GTCGGCAGGT CTGCAGCCCG GCGACCGCGT GGCGCTGCTG
CTGCCGAACC ACCTTCTCTA TCCCGTCGCC TTGGCTGCGA TCGCGCGCGC AGGCTTCGTG
GGGGTGACGA TGAACCCGCT CTACACAGCC CGCGAGGTGG CCTACCAGCT GGCGGATTCC
AGCGCGGTGG CGCTGGTGGT TGCCGATCCG TTCGCGGGAC TCGCGGCCGA GGCCATCGAG
CGGACCGAAG TCCGGCACGT CGTCACCGTG CCGATGCAGG ACCTGAGGCA ATCGCTGCTC
GCGCCCGCCG GCGACCGGCC GGTGCTGGCA CGCAGCTCCG ATGTGCATCT TGTTCCGCTG
CACACCGCCA TCGCATCGGT GCAGGCTGCA GGCTTCAGCG CCCCGCAGGT GCGCCCCTCC
GATCTCGCAT TCCTGCAATA CACGGGCGGC ACGACCGGCG TGTCGAAGGG CGCCTGCCTC
ACGCATCGCA ACGTCCTGGT GAGTGTGCTG CAGATGCAGT CCTGGCTGCG GCTGAACCTC
GAGATCCAGA ACTTCGAGCT GGTCACGCCG CTGCCGCTGT ACCACATCTT CCCGCTCGGC
ATGGCGCTGA TGGCGCTGGC GAGCGGCGGA CACAACCGGC TCGTCATGAA TCCGCGCGAC
ATCCAGGCGC TGTGCGCCGA ATTGCGGCGG GCGCCTTTCG ACGTGCTGAT CGGCGTCAAC
ACCATGTTCA ACGGCATGGT GAACCTGCCC GAACTGTCGT CGGTCGATTT CTCGCGCTGC
GGCATGGTCA TCGGCGCTGG CGCCTCGATC CAGGCGGCGG TCGCGCGCAG GTGGGAGGCG
GCCGGCGGGC CGCCGATCAC CGAGGCCTAC GGGCTCACGG AGACATCGCC CAGCGCCACC
TTCAATGCGC CGGGCTGCAA CGGCACCATC GGCGTTCCGG TGCCCTCCAC CGACGTGATG
ATCGTCGACG ACGCGGGCGG GCCGGTGGCG CAGGGCGCGC CCGGCGAGCT GCTCATCAAG
GGGCCGCAGG TGTTTGCCGG CTACTGGAAG CGCGAGGAAG AAACGCGCAT GGCATTCACC
AGCGATGGCT GGTTCCGCAC GGGCGATGTC GTCACCATGG ATGCACAGGG GCTGATGACC
ATCGTCGACC GCAAGAAGGA CATGATCCTG GTGTCCGGAT TCAACGTGTA TCCGAACGAG
ATCGAGGGCG TGGTCGCGCT GCATCCGGAC GTGCTGGAGT GCGCCTGCGT CGGCGTGCCC
GACGAGCGCT CCGGCGAAGT CCCCCACCTG TTCGTCGTGC GCCGCTCGCC GGGCCTGCAG
GCGGACCAGG TCGAATCGCA CTGCCGCGAG CTCCTGGCGC CCTACAAGGT GCCTCGGCGC
ATCACCTTTC TCGAGGCACT GCCCAAATCG ACCGTGGGCA AGATCCTGCG CAAGGAACTG
CGGGCCCCGG CGGCGGCCTG A
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| Protein sequence | MDQRIWHASY PAGLPRELVY GEHDTLATLF EGAFARNASR PAVTCNGESL SFAELEQASA
RFAAFLQSAG LQPGDRVALL LPNHLLYPVA LAAIARAGFV GVTMNPLYTA REVAYQLADS
SAVALVVADP FAGLAAEAIE RTEVRHVVTV PMQDLRQSLL APAGDRPVLA RSSDVHLVPL
HTAIASVQAA GFSAPQVRPS DLAFLQYTGG TTGVSKGACL THRNVLVSVL QMQSWLRLNL
EIQNFELVTP LPLYHIFPLG MALMALASGG HNRLVMNPRD IQALCAELRR APFDVLIGVN
TMFNGMVNLP ELSSVDFSRC GMVIGAGASI QAAVARRWEA AGGPPITEAY GLTETSPSAT
FNAPGCNGTI GVPVPSTDVM IVDDAGGPVA QGAPGELLIK GPQVFAGYWK REEETRMAFT
SDGWFRTGDV VTMDAQGLMT IVDRKKDMIL VSGFNVYPNE IEGVVALHPD VLECACVGVP
DERSGEVPHL FVVRRSPGLQ ADQVESHCRE LLAPYKVPRR ITFLEALPKS TVGKILRKEL
RAPAAA
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