| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5336 |
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| Symbol | |
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| ID | 7975797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 37236 |
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| End bp | 39008 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795930 |
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| Product | dihydrolipoamide dehydrogenase |
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| Protein accession | YP_002947204 |
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| Protein GI | 239820019 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
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| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.110925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACACA TGGTGGAAGT CAAGGTCCCG GACATCGGCG AATTCAAGGA TGTCGCGGTC
ATCGAACTGC TGGTCAAGCC GGGCGAAGTC ATCGCGGTCG ATACCGGGTT GATCATGGTG
GAGTCGGACA AGGCCTCGAT GGAGATTCCT TCGAGCCATG CGGGGACCGT GAAGGAACTC
AAGGTGGGGC TGGGGGACAA GGTGAGTGAA GGCTCCGTCA TCCTGGTCAT TGAGACCGCC
GCGGCGGGAG CGGGGGCACC CCCACCCCAG CCCTCTCCCG CCAGCGGGAG AGGGAGCGAA
GCCGCGGCGG CTCCGGCTCC AGTGCCGGCA CCCGCTGCGG GCAGCTACGC CGGCAAGGTA
GACCTGGAAT GCGAGGTGCT CGTGCTCGGC GCCGGCCCCG GCGGCTATTC GGCCGCATTC
CGCAGCGCCG ACCTCGGCAT GAAGACCGTG CTGGTCGAAC GTTACGCCAC GCTCGGCGGC
GTGTGCCTCA ACGTGGGCTG CATTCCCTCG AAGGCGCTGC TGCACACGGC CGGCGTGATG
GACGAGGTGA AACTGCTCGC CAGGCACGGC ATCAGGTACA CCGCGCCCGA AGTCGACATC
GATGCGCTGC GCGGCTTCAA GGACGGCGTC ATCAAGAAGC TCACCGGCGG CCTCGCGGGC
ATGGCGAAGG CGCGCAAGGT CGAGGTGGTC ACCGGTGTCG GCAGCTTCCT TGATGCGCAT
CACGTCGAGG TGGTGGGCGG GGGCGGCGGC AAGCGCGTGC TGAAGTTTGC CAAGGCCATC
ATCGCCGCGG GCTCGCAGGC CGTGAAGCTG CCCTTCATGC CCGAGGACGA GCGCGTGGTC
GATTCGACCG GCGCGCTGCT GCTCAAAAGT ATTCCCAGGC GCATGCTGGT GATCGGCGGC
GGCATCATCG GCCTGGAGAT GGCCACGGTG TACTCGACGC TGGGCACGCG CATCGACGTG
GTCGAGATGC TCGACGGCCT CATGCAGGGC GCCGACCGCG ACCTCGTCAA GGTGTGGGAG
AAATTCAACG CGCCGCGTTT CGACAACGTG ATGCTCAAGA CCAAGACCGT CGGTGCCAAG
GCGACCCAGG CCGGCATCGA GGTCAGCTTC GAAGGCGAGA AGGCACCGAA GGAAGCCCAG
GTCTACGACC TCGTGCTCGT GGCGGTTGGC CGCAGCCCCA ACGGCAAGAA GATCGCCGCC
GACAAGGCCG GCGTGGCCGT CACCGAGCGC GGCTTCATCG AGGTCGACAG GCAGATGCGC
ACCAACGTGC CGCACATCTT CGCCATCGGC GACATCGTGG GCCAGCCCAT GCTCGCCCAC
AAGGCCGTGC ACGAGGCGCA CGTGGCGGCC GAGGTGGCGC ATGGCGAGGC CGCGTACTTC
GATGCGCGGC AGATTCCTTC GGTGGCCTAC ACCGACCCCG AGGTGGCCTG GGCCGGCAAG
ACCGAGGAAC AGTGCAAGGC CGAAGGCCTG AAGGTCGGCA AGGCGGTGTT CCCGTGGGCC
GCATCGGGCC GCGCCATCGC CAACGGGCGC GATGAAGGCT TCACCAAGCT GCTGTTCGAC
GAGGCCACGC ACCGCATCGT CGGCGGCGGC ATCGTCGGCA CGCATGCGGG CGACCTGATC
GGCGAGCTGT GCCTGGCCAT CGAGATGGGC TGCGAGCCCG CCGACATCGG CAAGACCATC
CACCCGCATC CGACGCTCGG CGAATCCATC GGCATGGCGG CCGAGCTGTT CGAAGGGGTG
TGCACGGACC TGCCCCCGGT GAAGAAGAAG TAG
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| Protein sequence | MAHMVEVKVP DIGEFKDVAV IELLVKPGEV IAVDTGLIMV ESDKASMEIP SSHAGTVKEL
KVGLGDKVSE GSVILVIETA AAGAGAPPPQ PSPASGRGSE AAAAPAPVPA PAAGSYAGKV
DLECEVLVLG AGPGGYSAAF RSADLGMKTV LVERYATLGG VCLNVGCIPS KALLHTAGVM
DEVKLLARHG IRYTAPEVDI DALRGFKDGV IKKLTGGLAG MAKARKVEVV TGVGSFLDAH
HVEVVGGGGG KRVLKFAKAI IAAGSQAVKL PFMPEDERVV DSTGALLLKS IPRRMLVIGG
GIIGLEMATV YSTLGTRIDV VEMLDGLMQG ADRDLVKVWE KFNAPRFDNV MLKTKTVGAK
ATQAGIEVSF EGEKAPKEAQ VYDLVLVAVG RSPNGKKIAA DKAGVAVTER GFIEVDRQMR
TNVPHIFAIG DIVGQPMLAH KAVHEAHVAA EVAHGEAAYF DARQIPSVAY TDPEVAWAGK
TEEQCKAEGL KVGKAVFPWA ASGRAIANGR DEGFTKLLFD EATHRIVGGG IVGTHAGDLI
GELCLAIEMG CEPADIGKTI HPHPTLGESI GMAAELFEGV CTDLPPVKKK
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