Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5290 |
Symbol | |
ID | 7972723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5614673 |
End bp | 5615218 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644795884 |
Product | RNP-1 like RNA-binding protein |
Protein accession | YP_002947158 |
Protein GI | 239818248 |
COG category | [R] General function prediction only |
COG ID | [COG0724] RNA-binding proteins (RRM domain) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCAACA AACTGTATGT CGGCAACCTG CCTTACTCGG TGCGCGACAG TGATCTCGAA CAGGCTTTTG GACAATTCGG CGCGGTGACC AGCGCCAAGG TCATGATGGA ACGCGACACG GGCCGCTCGA AGGGCTTCGG CTTCGTCGAG ATGGGCAGTG ACGCGGAAGC GCAAGCAGCC ATCAATGGCA TGAACGGCCA GCCGCTCGGC GGCCGCAGCG TCGTCGTCAA CGAAGCACGT CCCATGGAAG CACGTCCGCC CCGCAGCGGT GGTGGCGGCT ACGGCGGCGG CGGTGGTGGT TATGGCGGCG GTGGTGGCGG TGGCTACGGC GGCGGCGGTG GTGGCGGCTA CGGTGGTGGC GGCGGCGGCC GCTCCGGCGG TGGTGGCGGC TATGGCGGCG GTGGCGGTGG CCGCTCCGGC GGCGGTGGTG GTGGCGGCGA TGGCGGCTTC CGCAGCCCCT ACGGTGCCGG CCCCCGTGGC GGTGGCGGCG GTGGCCGCTC CGGCGGTGGT GGTGGCTACG GCGGCGGCGG CAACAGCGGC TACTGA
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Protein sequence | MGNKLYVGNL PYSVRDSDLE QAFGQFGAVT SAKVMMERDT GRSKGFGFVE MGSDAEAQAA INGMNGQPLG GRSVVVNEAR PMEARPPRSG GGGYGGGGGG YGGGGGGGYG GGGGGGYGGG GGGRSGGGGG YGGGGGGRSG GGGGGGDGGF RSPYGAGPRG GGGGGRSGGG GGYGGGGNSG Y
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