Gene Vapar_5290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5290 
Symbol 
ID7972723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5614673 
End bp5615218 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content71% 
IMG OID644795884 
ProductRNP-1 like RNA-binding protein 
Protein accessionYP_002947158 
Protein GI239818248 
COG category[R] General function prediction only 
COG ID[COG0724] RNA-binding proteins (RRM domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCAACA AACTGTATGT CGGCAACCTG CCTTACTCGG TGCGCGACAG TGATCTCGAA 
CAGGCTTTTG GACAATTCGG CGCGGTGACC AGCGCCAAGG TCATGATGGA ACGCGACACG
GGCCGCTCGA AGGGCTTCGG CTTCGTCGAG ATGGGCAGTG ACGCGGAAGC GCAAGCAGCC
ATCAATGGCA TGAACGGCCA GCCGCTCGGC GGCCGCAGCG TCGTCGTCAA CGAAGCACGT
CCCATGGAAG CACGTCCGCC CCGCAGCGGT GGTGGCGGCT ACGGCGGCGG CGGTGGTGGT
TATGGCGGCG GTGGTGGCGG TGGCTACGGC GGCGGCGGTG GTGGCGGCTA CGGTGGTGGC
GGCGGCGGCC GCTCCGGCGG TGGTGGCGGC TATGGCGGCG GTGGCGGTGG CCGCTCCGGC
GGCGGTGGTG GTGGCGGCGA TGGCGGCTTC CGCAGCCCCT ACGGTGCCGG CCCCCGTGGC
GGTGGCGGCG GTGGCCGCTC CGGCGGTGGT GGTGGCTACG GCGGCGGCGG CAACAGCGGC
TACTGA
 
Protein sequence
MGNKLYVGNL PYSVRDSDLE QAFGQFGAVT SAKVMMERDT GRSKGFGFVE MGSDAEAQAA 
INGMNGQPLG GRSVVVNEAR PMEARPPRSG GGGYGGGGGG YGGGGGGGYG GGGGGGYGGG
GGGRSGGGGG YGGGGGGRSG GGGGGGDGGF RSPYGAGPRG GGGGGRSGGG GGYGGGGNSG
Y