| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5286 |
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| Symbol | |
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| ID | 7972719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5611134 |
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| End bp | 5611724 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795880 |
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| Product | protein of unknown function UPF0029 |
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| Protein accession | YP_002947154 |
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| Protein GI | 239818244 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1739] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00257] uncharacterized protein, YigZ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTCA CGCTCCCGCA ACCGGCGCAC AGCGAGCTGC TGATCAAGAA GAGCCGCTTC
ATCGGCTGCG TGCAGCCGGT GGCCGACCGG GCCGCGGCCC TGGCCGTGGT GGCATCCCTG
CGCAGCGAGC ATCCCGCCGC CGCGCATGTC TGCTGGGCGC TCATGGCGGG CGGCCAGTCG
GCCGCCAACG ACGACGGCGA GCCGGGCGGC ACGGCCGGGC GCCCCATGCT CGAAGTGCTG
CGGCACCAGC AGCTCGAAGG CGTGCTTGCC ACGGTGGTGC GGTACTTCGG CGGCATCAAG
CTGGGCGCGG GCGGACTCGT GCGGGCCTAC ACCGACGCGG TGGCGCAGGC CTGCCTCGGG
GCCACGCTGG TGCCGCTGGT GCGCCAGCGG CTGCTGCAAT GCGCCGTGCC CTATGCGCTC
GAAGGACTGG TACGGCGCGA AATTGCCGCG GCGCCCGGCG CGTCGCTGGT CGATGTGCGG
CATGGCGATG CGGTGGACTT CACCTTCACG CTGCCCGAGC CCGATGCGGA TGCCTTCATC
GCCCGCCTCG ACGATGCTGC GCAAGGGCGC GCCGTCTGGC CGCAGGCGTG A
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| Protein sequence | MSFTLPQPAH SELLIKKSRF IGCVQPVADR AAALAVVASL RSEHPAAAHV CWALMAGGQS
AANDDGEPGG TAGRPMLEVL RHQQLEGVLA TVVRYFGGIK LGAGGLVRAY TDAVAQACLG
ATLVPLVRQR LLQCAVPYAL EGLVRREIAA APGASLVDVR HGDAVDFTFT LPEPDADAFI
ARLDDAAQGR AVWPQA
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