| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5277 |
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| Symbol | |
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| ID | 7972710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5602285 |
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| End bp | 5603019 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795871 |
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| Product | 16S ribosomal RNA methyltransferase RsmE |
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| Protein accession | YP_002947145 |
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| Protein GI | 239818235 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCGTT TCCACTGTCC GGTGCCCTTG ACCGCGGGTG CCTCGCTCGA ACTGCCTCCC
GGCCCCGCGC GCCACGTTCA GGTGCTGCGC ATGCAGCCCG GCGATGCGCT CACCTTGTTC
GACGGCTCGG GCGGCGAATA TGCGGCAACC GTGGAGCGCA TGGGGCGCAG CGATGTGTCG
GTGGCGATCG GCGCCCATGC GCCGGCCGAG CGCGAGGCCG TGCGCTCGGT GCACCTGGCC
GTCGGCATGC CGGCCAACGA GCGCATGGAC TGGCTGGTCG AAAAAGCCAC CGAACTGGGC
GTCGCGAGCA TCCAGCCACT GGCCACGGCC CATGGCGTGC TGCGCCTTTC GGGCGAGCGC
GCCGAGAAGA AGAGGGCGCA TTGGGAAGCG ATTGCGATTG CCGCCTGCGA GCAATGCGGC
CGCAACCGCG TGCCGCGGAT CCATCCGGTG CGGCCGTTCT CGGGCCCCTC GGCCTGGATC
GGCGCGCATG CGGGCGAGGC CCCGCTGCGC CTTGTCCTGA GCCTGGCCGA AGGCATGCGG
CGCCTGGCCG ATGCCACCGC CTCGGCGCCG GCCGATCGCA GCGTGCTGGT GCTGAGCGGC
CCCGAGGGCG GCCTGAGCAG CGCCGAGGAA CAGAAAGCGC TGGCCTGCGG CTTTGCGCCG
GTCACGCTCG GGCCGCGCGT GCTGCGCGCC GAAACCGCGG CGCTGGCCGC GCTGGTATTG
CTCGCGGGCC CCTGA
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| Protein sequence | MPRFHCPVPL TAGASLELPP GPARHVQVLR MQPGDALTLF DGSGGEYAAT VERMGRSDVS
VAIGAHAPAE REAVRSVHLA VGMPANERMD WLVEKATELG VASIQPLATA HGVLRLSGER
AEKKRAHWEA IAIAACEQCG RNRVPRIHPV RPFSGPSAWI GAHAGEAPLR LVLSLAEGMR
RLADATASAP ADRSVLVLSG PEGGLSSAEE QKALACGFAP VTLGPRVLRA ETAALAALVL
LAGP
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