| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5168 |
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| Symbol | |
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| ID | 7969827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5489213 |
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| End bp | 5490355 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795762 |
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| Product | PepSY-associated TM helix domain protein |
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| Protein accession | YP_002947036 |
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| Protein GI | 239818126 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCGCG CATCCCTGAG ACGCCTCTGG CTCAAGATTC ACCGCTGGAT CGGCCTTTCG
CTCGGTCCGG TCCTGGCCCT CACGGCCCTG CTTGGCGCCG TGCTGGTGGT GGCCTTGCCG
ATCGACCGCG AAGCGCATCC CGCGCTCTTC GTCGCGCGCA GCGCGGCCGA TGCGGGAACG
GGGACGCCCG CGCTGCCGCT CGAACCGCTG CGCCAGCGCC TCGCGGCCGA GTTCGGCCCC
GACACCACCT TCACGCTGCG CCCGCCGCGC AGCCCCGGCG AAACGCTCTG GGTGTACGTA
CGCGGGCCCT GGGACGGCAC GCTCTACCTC GACCCCGCGA CCGGCGCGGA GCAAGGCCGG
CGCGGCTCGC ACGAAGGCGC CTACAACCTG CTCTTCGAGC TGCACAGCAG CCTGCTGCTG
GAAGACACGG GCAAGGGCAT CCTGGCGTTC GTGGCGCTGG CCTATCTTTT CCTGCTGGTC
ACCGGCCTCG TGCTCTGGTG GCCCGCGCGC TGGCCGCCGT CGCTGCGCAT CTCGCTGAAC
CGCGGCCTGC TGCGCGGGCT GTTCGACCTG CACCGCACCG GCGGCGCGGT GCTCGGGCTG
CTGATCGCGG TGTCTGTCTT CACGGGCGCC TACATGGCCT GGCGGCCGCT CGGCGGCTTC
ATTTCCGCCG CCATGGGCCA GGAGGTGGTC AAGCCGCCCG CGGTTCCCAA GGGCGCCGCA
ACAACAGGTC CGCGGCTCCC GCTCGACAAA CTGGTCGCCC GCGCACAGAA CGTGTTCCCA
GGCCAGCCGA TCGGCTACGT GCAGGTGCCG GCCAGGCCGA ACCGCCCGGT GCGCGTGCGC
TTCCGGCTGG CCGACGATCC GCATCCGAAC GGCATCAGCT CCGTGTGGCT GCATCCGCTC
ACGGGCGAGG TGCTGGCGGT GCGCCGCTGG CAGGACCTGG ACGCCGGCAA CGGCGCGGTG
GTGGTGATCT ACCCGCTGCA CACCGGCGTG CTGGGCGGGC CGGTGCACCA GGCGGTCACC
CTGCTGCTCG GGCTGGCGCT CGGCGGGCTG GGCTTGAGCG GCATCTGGCT CTGGTGGCGG
CGCCGCGCAG TGGCCGCCGC GGCCCGCGAC ATCGCCCTTG CCAACAACCG CACGACCTCC
TGA
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| Protein sequence | MLRASLRRLW LKIHRWIGLS LGPVLALTAL LGAVLVVALP IDREAHPALF VARSAADAGT
GTPALPLEPL RQRLAAEFGP DTTFTLRPPR SPGETLWVYV RGPWDGTLYL DPATGAEQGR
RGSHEGAYNL LFELHSSLLL EDTGKGILAF VALAYLFLLV TGLVLWWPAR WPPSLRISLN
RGLLRGLFDL HRTGGAVLGL LIAVSVFTGA YMAWRPLGGF ISAAMGQEVV KPPAVPKGAA
TTGPRLPLDK LVARAQNVFP GQPIGYVQVP ARPNRPVRVR FRLADDPHPN GISSVWLHPL
TGEVLAVRRW QDLDAGNGAV VVIYPLHTGV LGGPVHQAVT LLLGLALGGL GLSGIWLWWR
RRAVAAAARD IALANNRTTS
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