| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5163 |
|---|
| Symbol | |
|---|
| ID | 7971534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5484157 |
|---|
| End bp | 5485038 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644795757 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_002947031 |
|---|
| Protein GI | 239818121 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.860524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATC CCACCCTCGC CTTCAACAGC CACCGCAGCC GCCTGCAGGG CATTGCCTAC
CGCATGCTCG GCTCCGTCGC GGAAGCCGAA GAGGTGGTGC AGGACGCCTG GCTGCGCTGG
CACGAGGCCG ACAAGGCCGC CCTCGGTAGC GCCGAAGCCT GGCTGGTCAC CGTCGTCACC
CGTCTTTCGA TCGACCGGCT GCGCGCGGCC AAGGTGCAGC GCGAGCACTA CGTCGGCGCC
TGGATGCCCG AGCCCACGCT GACCGGCGGG CCGGACTCCC CGGAGCAGCT GCTCGAACGC
GCCGACAACA TCTCCGTCGC CTTCCTGGCC GTGCTCGAGC GCCTGGCGCC CGAGGCGCGC
GCCGCCTTCC TGCTGCGCGA AGTGTTCGAC GCCGACTACG ACGAGGTGGC CCGCACGCTC
GGCAAGAGCG AAGCCGCCTG CCGGCAGCTG GTGCACCGCG CCAAGGCGCA GGTGCAGGAG
GCGCGCCCGC GCTTCCAGGT GCCGCGCGAA ACCCACCAGC GCCTGCTGCG CGCCTTTGCC
GATGCGGCCG CACGCGGCAG CCTGCAGGAG CTGAAGGCGC TGATGGCGGA AGACGTGGAG
CTCATCGGCG ACGGCGGCGG CAAGGTGCAG AGCTTCAGCA AGGTCCTGCG CGGCAGCCAG
CGGCTCGCGC AGCTGTACTT CGCGCTCTGG CGCCGCATGG GCGCCGCGGT GCGCATGGAA
CTGGTGGAGC TCAACGGCGA GCCGGGGCTG TTGCGCTTTC TGGATGGTGA GCTCGAATCG
GCCCAGACCT TCGAGATCGA GGACGAGCGC ATCGTGCGCG TGCGCGTGCA GCGCAATCCC
GACAAGCTCG CGCGCATCGC GCAGCTCTAT TCGCTGAAAT AG
|
|---|
| Protein sequence | MDDPTLAFNS HRSRLQGIAY RMLGSVAEAE EVVQDAWLRW HEADKAALGS AEAWLVTVVT
RLSIDRLRAA KVQREHYVGA WMPEPTLTGG PDSPEQLLER ADNISVAFLA VLERLAPEAR
AAFLLREVFD ADYDEVARTL GKSEAACRQL VHRAKAQVQE ARPRFQVPRE THQRLLRAFA
DAAARGSLQE LKALMAEDVE LIGDGGGKVQ SFSKVLRGSQ RLAQLYFALW RRMGAAVRME
LVELNGEPGL LRFLDGELES AQTFEIEDER IVRVRVQRNP DKLARIAQLY SLK
|
|---|
| |