Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5148 |
Symbol | |
ID | 7971519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5462544 |
End bp | 5463320 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644795742 |
Product | GntR domain protein |
Protein accession | YP_002947016 |
Protein GI | 239818106 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.178203 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCCC GCTTCCAATC CATCGCTCCC GGTGCCCGCC TCGCCGACCA GGTGGCCGAC GCCTTGGCCG CCGAAGTGCG CAGCGGTCGC CTGTCCGAGG GCGACCGCCT GCCGACCGAG AGCGCGCTGG CCGAGCAGTT CGGCGTGAGC CGCACGGTGG TGCGCGAGGC GGTGTCGCGG CTCAAGTCGC TGGGGCTGCT CGATTCGCGC CAGGGCAGCG GCGTGTACGT GCGTGCCGCG GGCGTGGAGC CGCTGCGCTT CGAGATGCCG CACGTGGCCT CGCGCGAAGC GGTGATCCAG ATGGTCGAGC TGCGCCGCGC GCTCGAGGCC GAGGTGGCCG CGCTCGCAGC CGAGCGCCGC ACCCCTGAAG ACGTGCAGCA CATCCGCGAT GCCATCGACG CGCTGCATGC GGCCGTGGCC GCGGGCGGCA ACGGCGCCGA GGAAGACGTG CGCTTTCACC GCGCCATTGC CGAGGCCGCG CGCAATCCGT TCCTGGTCGG CACGCTGCAG TACCTGCGGC AGTTCCTGCA CGGCGCCACG CGCGTCACAC GCGCCAACGA GGCGCGCCGC GCCGACTTCG CGCGCGAGGT GGCGCAGGAG CATGCGCGCA TCGTCGAGGC CATCGAGGCC GGCGATGCGC TGCGGGCGCG CGAGGCGGCC AAGTCCCACA TGGACAACGC GATCCGCCGC ATCGAGCAGG CCGACCCCGC CTTCTGGCAG CAGGAGGGCG CGCAGCTCGC GCGGCCGCTG GTCGAAGGCT GGCCGCTCGG CAGCTGA
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Protein sequence | MTARFQSIAP GARLADQVAD ALAAEVRSGR LSEGDRLPTE SALAEQFGVS RTVVREAVSR LKSLGLLDSR QGSGVYVRAA GVEPLRFEMP HVASREAVIQ MVELRRALEA EVAALAAERR TPEDVQHIRD AIDALHAAVA AGGNGAEEDV RFHRAIAEAA RNPFLVGTLQ YLRQFLHGAT RVTRANEARR ADFAREVAQE HARIVEAIEA GDALRAREAA KSHMDNAIRR IEQADPAFWQ QEGAQLARPL VEGWPLGS
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