| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5124 |
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| Symbol | |
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| ID | 7971495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5438847 |
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| End bp | 5439617 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795718 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002946992 |
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| Protein GI | 239818082 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCAGC CGATCCTCTT GTTCGGATGG TTCCGCTGGG ACATCCTGGT CGAATACAGG
GACCTGTTCT GGCAGGGCGC CTGGATGACG CTGCGCATGA CGGTGGTCTG CGTGCTGCTG
GGTTCGAGCT GGGGCCTGTG CCTGGCGCTC GCGCGGCTCG CCCGGCCGCG CCATGCGCCC
TGGAGCTGGG TCGCGCGCTT CTTCCTGCGC TGGCCGGCCA CGGTATACGT GAGCTTCTTC
CGCGGCACGC CTTTGTTCGT GCAGATCCTG CTGATCCACT TTGCGGTGAT GCCGGTGTTC
ATCCATCCGG CGACCGGCCT CCTGATCAGC GGCGACCTGG CGCGCGAGCT CAAGCAGGAG
CACGGCGCGC TGATCTCCGG CGTGGTGGCG CTCACGCTCA ATTCGGCGGC CTACATCTCG
GAGGTGTTCC GCGCCGGCAT CCAGTCGATC TCGCGCGGGC AGTTCGACGC CGGCCGCTCG
ATCGGCTTCA CGCCGCTGCA GGTCATGCGC TACGTGGTGC TGCCGCAGGC CTTCAGGCGC
ATGCTGCCGC CGCTCGGCAA CAACGCGATC GCGCTGCTGA AAGACACCTC GCTGGTCTCG
GCCATCGGCC TGGCCGAGCT GGCCTATGCG GCGCGCACGG TGGCCGGTGC CTATGCGCGC
TACTGGGAGC CGTACCTCGC GATCTCGGTG GTGTACTGGG TGATGACGCT CGTGCTCACG
ACAATGCTGC GGCGGCTCGA ACACCGCCTG GCACGCAGCG ACAGGGGATA G
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| Protein sequence | MEQPILLFGW FRWDILVEYR DLFWQGAWMT LRMTVVCVLL GSSWGLCLAL ARLARPRHAP
WSWVARFFLR WPATVYVSFF RGTPLFVQIL LIHFAVMPVF IHPATGLLIS GDLARELKQE
HGALISGVVA LTLNSAAYIS EVFRAGIQSI SRGQFDAGRS IGFTPLQVMR YVVLPQAFRR
MLPPLGNNAI ALLKDTSLVS AIGLAELAYA ARTVAGAYAR YWEPYLAISV VYWVMTLVLT
TMLRRLEHRL ARSDRG
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