Gene Vapar_5119 details

Gene Information

• Locus tag: Vapar_5119
• Symbol: secD
• ID: 7971490
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 5431133
• End bp: 5433016
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795713
• Product: preprotein translocase subunit SecD
• Protein accession: YP_002946987
• Protein GI: 239818077
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCGTT ATCCGGTCTG GAAGTACGCG ATCATCGTGA TCGTGCTGCT TGTGGGGTTG 
ATCTATTCCC TGCCGAACTT CTTCGGCGAG GCGCCTGCCG TGCAGGTGTC CGCGGCCAAG 
TCCACCGTCA AGGTCGACGC GGCCACCCAG AGCCGGGTCG AGGAGGCGCT CAAGGCAGCC 
GGGCTCGCGC CCGACCTGCT CACGCTCGAG GGCGGCTCGC TGCGCGCGCG CTTCGCCACG 
CCCGACGAGC AGCTCAAGGC GCGCGACACG CTGCAGCGCA CGCTGGTGCC CGATCCGGCC 
GATCCGCCCT ACGTGGTGGC GCTGAACCTG GTCTCGCGCT CGCCGGCCTG GCTCACGGCG 
CTGCATGCGT TCCCGATGTA CCTGGGCCTG GACCTGCGCG GCGGCGTCGA CTTCCTGCTG 
CAGGTCGACA TGAAGGGCGC CATCGACAAG AAGGCCGAAT CCTTCGCGAG CGACCTGCGC 
ACCACCTTCC GCGACAAGGG CATCCGCGGC ACCTCGGTGA ACCGCAACGG CCAGGCCATC 
GAGGTCTCGT TCCGCGACGC GGCCGCGCTC GAAGCGGCCA AGCGCCTGAT CCAGGACCAG 
TTCCAGGACC TCGCCACCAC CGACAGCCAG GACGGCAGCA ACTGGCGCCT GGTGGCCACC 
ATCAAGCCCG AAGCCGCGCG CCGGCTGCAG GACGCGGCGC TCAAGCAGAA CATCACCACG 
CTGCACAACC GGATCAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCCTG 
GACCGCATCG TGGTGCAGCT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG 
GGGCGCACCG CCACGCTCGA GATGCGCCTG GTCGACGAAA GCGCCGAAGG CCGCGCGGCC 
GAACTGAGCG GCGGGCCGGT GCCCTTCGGC TCCGAGAAAT TCCTCGAGCG CAACGGCCGC 
CCCGTGATCG TGAAGAAGCA GGTGCTGGTC ACCGGCGAGA ACCTCACCGA CGCGCAGCCC 
GGCTTCGACC AGCAGAGCAA CCAGCCCAAG GTCGACCTGA CCATGGACGC CAAGGGCGGC 
CGCATCATGC GCGACGTGAG CCGCGAGAAC TACAAGAAGC GCATGGCCAT GCTGATCTTC 
GAGAAGGGCA AGGGCGAAGT GCTCACGGCT CCGTCGATCA ACGGCGAACT CGGCAACCGC 
TTCCAGATTT CCGGCTCGAT GACCGTGGCC GAGGCCGCCG ACCTCGCGCT GCTGCTGCGC 
GCCGGCTCGC TGGCCGCGCC GATGGAGATC ATCCAGGAAC GCACCATCGG CCCGAGCCTG 
GGCGCCGACA ACATCGAGAA GGGCTTCAAG AGCGTGATGT ATGGCTTCTT GGCCATCATG 
GTGTTCATGT GCGCCTACTA CGCGCTGTTC GGCCTGTTCT CGTCGATCGC GCTGGCCGTC 
AACCTGATGC TGCTGGTGGC CATTCTCTCG ATGCTGCAGG CTACGCTCAC GCTGCCCGGC 
ATCGCGGCCA TGGCGCTGGC CATCGGCGTG GCCATCGACT CCAACGTGCT GATCAACGAG 
CGCGTGCGCG AGGAGCTGCG CAACGGCGCC TCGCCGCAGG CGGCCATCCA CGCCGGCTAC 
GACCGCGCCT GGGGCACGAT CCTCGACTCC AACGTGACCA CGCTGATCGC GGGCATCGCG 
CTGCTGGCCT TCGGCTCGGG CCCGGTGCGC GGCTTCGCGG TGGTGCACTG CATCGGCATC 
GTCACCTCGA TGTTCTCCGC CGTGTTCTTC TCGCGCGGCC TCGTGAACTT CTGGTACGGC 
CAGAAGAAGA AGCTCAAGAC GGTGTCGATC GGCACGGTCT GGCGCCCCAA GACCGACGGC 
ACTGCCGTGG CTGAAGGCAA GTAA 

 

Protein sequence

MNRYPVWKYA IIVIVLLVGL IYSLPNFFGE APAVQVSAAK STVKVDAATQ SRVEEALKAA 
GLAPDLLTLE GGSLRARFAT PDEQLKARDT LQRTLVPDPA DPPYVVALNL VSRSPAWLTA 
LHAFPMYLGL DLRGGVDFLL QVDMKGAIDK KAESFASDLR TTFRDKGIRG TSVNRNGQAI 
EVSFRDAAAL EAAKRLIQDQ FQDLATTDSQ DGSNWRLVAT IKPEAARRLQ DAALKQNITT 
LHNRINELGV AEPVIQQQGL DRIVVQLPGV QDTAKAKDIL GRTATLEMRL VDESAEGRAA 
ELSGGPVPFG SEKFLERNGR PVIVKKQVLV TGENLTDAQP GFDQQSNQPK VDLTMDAKGG 
RIMRDVSREN YKKRMAMLIF EKGKGEVLTA PSINGELGNR FQISGSMTVA EAADLALLLR 
AGSLAAPMEI IQERTIGPSL GADNIEKGFK SVMYGFLAIM VFMCAYYALF GLFSSIALAV 
NLMLLVAILS MLQATLTLPG IAAMALAIGV AIDSNVLINE RVREELRNGA SPQAAIHAGY 
DRAWGTILDS NVTTLIAGIA LLAFGSGPVR GFAVVHCIGI VTSMFSAVFF SRGLVNFWYG 
QKKKLKTVSI GTVWRPKTDG TAVAEGK