| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5107 |
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| Symbol | |
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| ID | 7971478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5419359 |
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| End bp | 5420324 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795701 |
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| Product | beta-lactamase domain protein |
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| Protein accession | YP_002946975 |
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| Protein GI | 239818065 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.065858 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCA ACGTCTCCTT TGCCTCGGCG TCCGACACGC GCGAGCAGAA GCCGCAGCTG
CGCGAACTCG CACCCGACGT GTACGGCTAC ATCAGCGACT TCGATCCCAA CTGCGGCTTC
GTCGTCGGTG ACGAGCAGGT GGTGCTGATC GACACGCGCC CCACGCCGCG CATGGCGCGC
GACTTTCTCG CGGCCATCCG CAAGGTGACC GACAAACCGA TCAAGACCAT CGTGCTCACG
CACTACCACG CGGTGCGCGT GATGGGCGCG AGCGCTTTCG GCGAGGTCGA GGCCATCATC
GCGAGCAACG GCACGCTCGA CTGGATCCGC ACGCGCGGCC AGGCGGATTT CGACTCGGAA
GTCGGCCGCT TTCCGCGCCT CTTCGCGGGC GTGGAAGAGA TTCCAGGCCT GACCTTTCCG
ACGCAGAGCT TCGAGCGCGA GATGACGCTG CGGCTCGGCG GCAGCCGCGA ACTGCATCTG
AGAGCCCTGG GCCGCGGCCA TTCGAGCGGC GACACGGTCG CGTGGCTGCC CGACTGCGGC
GTGCTGTTCT CGGGCGACGT GGTCGAAAAC CGCTGCGGCG TCTATGCCGG CGACGCGTAC
ATCGGCGACT GGGCCGGCAC GCTCGATGCG GTGCGGGCCC TGAAGCCGCG CGTGCTGGTG
CCGGGCCGCG GCGCCGTGCT GCGGGGCGAG GCCGAATGCG CCGAGGCCAT CGGACTCACC
CAGGCCTTTC TCCAGGCCTT GCTCGACAGC GTGAAGGCCG GCATGGCCGC GGGCGAAACG
CTCAAGGGCT GCTTCGCGCG CGCCGAAGCG GCAATGACGC CGCGCTTCGG CAGCTGGCCC
GTGTTCCAGC ACGTGCTGCC CTTCGACGTC TCGCGCGCGT ACGACGAACT GCGCGGCATC
GAACACCCCG TGGTGTGGAC CGCGCAGCGC GACCGCGAAC TGTGGCAGAC GCTGCGCGGC
GAATGA
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| Protein sequence | MTANVSFASA SDTREQKPQL RELAPDVYGY ISDFDPNCGF VVGDEQVVLI DTRPTPRMAR
DFLAAIRKVT DKPIKTIVLT HYHAVRVMGA SAFGEVEAII ASNGTLDWIR TRGQADFDSE
VGRFPRLFAG VEEIPGLTFP TQSFEREMTL RLGGSRELHL RALGRGHSSG DTVAWLPDCG
VLFSGDVVEN RCGVYAGDAY IGDWAGTLDA VRALKPRVLV PGRGAVLRGE AECAEAIGLT
QAFLQALLDS VKAGMAAGET LKGCFARAEA AMTPRFGSWP VFQHVLPFDV SRAYDELRGI
EHPVVWTAQR DRELWQTLRG E
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