| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5100 |
|---|
| Symbol | |
|---|
| ID | 7971471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5412015 |
|---|
| End bp | 5413463 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795694 |
|---|
| Product | pyruvate kinase |
|---|
| Protein accession | YP_002946968 |
|---|
| Protein GI | 239818058 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0469] Pyruvate kinase |
|---|
| TIGRFAM ID | [TIGR01064] pyruvate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCACGG ATCGCCTTCC CCGCCACGCC ACCAAGATCG TCGCCACGCT CGGCCCGGCG
TCCAACACGC CCGAGCTGCT GGAGCAGATG ATCCTGAACA AGGTCAGCGT GGTGCGGCTC
AATTTCAGCC ACGGCACCGC GCAGGACCAC ATCGACCGCG CGGCCATGGT GCGCGAGGCC
GCACGCAAGA CGGGCCGCGA GGTGGCGATC ATGGCCGACC TGCAGGGCCC CAAGATCCGC
GTCGGCAAGT TCGCGCAGGG CAAGGTCTGG CTCGAGCCGG GCGCCAAGTT CGTGCTCGAC
GCCTCGCGCA CCGAGCCCGG CGACGCCGAG GCGGTCGGCC TCGACTACAA GGACCTGCCG
CGCGACGTGC GCCCCGGCGA CCGGCTGTTG CTGAACGACG GCCTCATCGT GCTCACGGTC
GACGCGGTTC GCGGCGAGGC GGTGCACACC ACCGTCAAGC TCGGCGGTGA GCTCTCCAAC
AACAAGGGCA TCAACAAGCA GGGCGGCGGC CTCACCGCCC CCGCGTTGAC GGCCAAGGAC
ATGGAAGACA TCAAGACCGC GATGAGCTTC CAGGCCGACT ACGTGGCCGT GAGCTTTCCC
AAGAACGCCA CCGACATGGA AATGGCGCGC CAGCTGTGCA ACGTGGCCGC GGCCGAGTAC
GGCCACAAGC CGGGCCTCAT CGCCAAGATC GAGCGCGCCG AGGCCATTCC CAAGCTGGAA
GAGATCCTGC GCGCGAGCGA CGGCATCATG GTGGCGCGCG GTGACCTCGC CGTGGAGGTG
GGCAATGCCG CCGTGCCGGC GCTGCAGAAA AAAATGATCC GCATGGCGCG CGACATGGAC
AAGGTGGTGA TCACCGCGAC CCAGATGATG GAGTCGATGA TCACCAACCC GGTGCCGACG
CGCGCCGAGG TGAGCGACGT GGCCAACGCC GTGCTCGACG GCACCGACGC CGTGATGCTC
TCGGCCGAAA CCGCCTCGGG CCGCTATCCG CTCGAGACCG TGCAGGAGAT GAGCCGCATC
TGCGAAGCTG CCGAAGCGGC CGAGGACAAG ATGCTGGACG CCGACTTCAG CGGCAAGACC
TACAGCCGCA TCGACCAGTC GATTGCCATG GGCGCGCTGT TCACGGCGCA CCACCTGGGC
GCCAAGGCCA TCGTGGCGCT CACCGAGTCG GGCTCCACGC CGCTGTGGAT GAGCCGCCAT
CGCGCGCACA TCCCGATGTA CGCACTGACC TCGCGCCTGG CCACGCAGCG CCGCATGGCG
CTCTACCGCA ACGTGCGCCC GCTGCTGATG GATTCGGAGA GCGACCGCGA CACCGCGCTC
GAGCAGGCCG AAGCCCACCT GAAGAAGCGC GGCATCGTGC AGACCGGCGA CGTCTACGCC
ATCACCTGCG GCGAGCCGAT GGGTGCCCCG GGCGGCACCA ACATGCTGAA AATTTGCCGC
GCGAGCTGA
|
|---|
| Protein sequence | MITDRLPRHA TKIVATLGPA SNTPELLEQM ILNKVSVVRL NFSHGTAQDH IDRAAMVREA
ARKTGREVAI MADLQGPKIR VGKFAQGKVW LEPGAKFVLD ASRTEPGDAE AVGLDYKDLP
RDVRPGDRLL LNDGLIVLTV DAVRGEAVHT TVKLGGELSN NKGINKQGGG LTAPALTAKD
MEDIKTAMSF QADYVAVSFP KNATDMEMAR QLCNVAAAEY GHKPGLIAKI ERAEAIPKLE
EILRASDGIM VARGDLAVEV GNAAVPALQK KMIRMARDMD KVVITATQMM ESMITNPVPT
RAEVSDVANA VLDGTDAVML SAETASGRYP LETVQEMSRI CEAAEAAEDK MLDADFSGKT
YSRIDQSIAM GALFTAHHLG AKAIVALTES GSTPLWMSRH RAHIPMYALT SRLATQRRMA
LYRNVRPLLM DSESDRDTAL EQAEAHLKKR GIVQTGDVYA ITCGEPMGAP GGTNMLKICR
AS
|
|---|
| |