| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5061 |
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| Symbol | |
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| ID | 7974180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5374985 |
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| End bp | 5376130 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795655 |
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| Product | hypothetical protein |
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| Protein accession | YP_002946929 |
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| Protein GI | 239818019 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4222] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0250139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCGCC GGCTGCTGGC GGGCGCGGGC GCCATGGCGG CGGGGCTCGC AGGGCTGGGA
TTGGCCGGCT GCCGCAGTCC GGCGGCCATT CCGCCGGCGG GGCCACAGCG GCTGCGCCGC
CTTGCCGAGG CGCACTGGCC GTACCGGCTG AATATACAGG GCACGACCGC CGGCGGCCTC
TCGGGCATCG ACTACGACGC AGAAAGAAGT GAGTACCTGC TGCTCAGTGA TGATCGGTCA
GACCTCGATC CTGCGCGTTT CTATGTGGCG CAATGGGCGC CTCCCTGGGC GCAGCCACCC
GAACCGAAGG GTGTCGTGCA GCTGCAACGC CCGGGCGGCG GTCCCTGGCC TGCGCGGCGC
CGCGCCGAGC CCGGCACCCC GGTTCCGGAC CCCGAAGCGC TGCGCCTGCG CCCAGGCGCC
GGAACCCTGC TCTGGACGAG CGAAGGCGAT GTGGGCCGGG GATTCGGCCC GGCCTTGTAC
GAGTCGGCGC GCGACGGCCG CCTGCTGCGC GAGTTCGCGC TGCCGGCCAT GTTCAACCCC
GATCCGGCCC AGCGCCGCGG CCCGCGCGAC AACCTGGGCC TCGAGGGCCT GGCGCTGGCG
CCGGACGGCC GCCACGCCTG GCTTGGCATG GAAAACGCGC TGATCCAGGA CGGCCCGGTT
CCCACCACGC GGGCGCCGGG CGGCCCCTGC CGGCTGACCC GGATCGACCT GGAGAGCGGC
CAGGCCACGC GCCAGATCGC CTATGTGCCC GATGCGATCC CGCTGCGGCC GCTCATTCCT
GGCAGCCATG CGGACAACGG CGTCAGCGAG ATCCTGATGC TCGACGCCGA CCGCATGCTG
GTGCTGGAAC GCGCCTATGC CACCGGCGCC GGAAACTCGC TGCGCCTGTA CGAAATCGAT
ACCCGCAACG CCACCGACGT GCTGGCCATC GACGCGCTCG CCGCGGGCAA CCACCGCGCC
GCGCCGAAAA CCCTGGTCGC CGACTTCGCC TGGCTCGGCC TTTCGCGCCT CGACAACACC
GAGGGCATGT GCTGGGGACC GCCGCTTCCG GACGGCAAGC GCATGCTGGT GGTCGTGAGC
GACGACAATT TCAACCCGCT GCAGACAACC CAGTTCGCGG CATTCGAATA CACCGACCGA
CCATGA
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| Protein sequence | MRRRLLAGAG AMAAGLAGLG LAGCRSPAAI PPAGPQRLRR LAEAHWPYRL NIQGTTAGGL
SGIDYDAERS EYLLLSDDRS DLDPARFYVA QWAPPWAQPP EPKGVVQLQR PGGGPWPARR
RAEPGTPVPD PEALRLRPGA GTLLWTSEGD VGRGFGPALY ESARDGRLLR EFALPAMFNP
DPAQRRGPRD NLGLEGLALA PDGRHAWLGM ENALIQDGPV PTTRAPGGPC RLTRIDLESG
QATRQIAYVP DAIPLRPLIP GSHADNGVSE ILMLDADRML VLERAYATGA GNSLRLYEID
TRNATDVLAI DALAAGNHRA APKTLVADFA WLGLSRLDNT EGMCWGPPLP DGKRMLVVVS
DDNFNPLQTT QFAAFEYTDR P
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