| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5054 |
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| Symbol | rplR |
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| ID | 7974173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5371802 |
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| End bp | 5372170 |
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| Gene Length | 369 bp |
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| Protein Length | 122 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795648 |
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| Product | 50S ribosomal protein L18 |
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| Protein accession | YP_002946922 |
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| Protein GI | 239818012 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0256] Ribosomal protein L18 |
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| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00315198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGTTGA CCAAAAAAGC ACAGCGTCTT CGCCGCTCGC GCCAGACCCG CATCCGCATC
GCGACGCAGG GCGTGGCCCG TCTGACGGTG AACCGCACCA ACCTGCACAT CTATGCCACC
GTCATCTCCG ACGACGGCAC CAAGGTGATC GCCACCGCAT CGACGGCCGA AGCCGAAGTG
CGCGCTGCAC TCGGCGGTTC GGGCAAGGGC GGCAATGCCG CCGCTGCAAC GGCCATCGGC
AAGCGCATCG CTGAAAAGGC GAAGGCTGCC GGCGTCGAGA AGGTCGCCTT CGACCGCGCT
GGTTTCGCGT ACCACGGCCG CGTCAAGGCG CTGGCCGACG CTGCCCGCGA AGCCGGCCTG
CAGTTCTAA
|
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| Protein sequence | MMLTKKAQRL RRSRQTRIRI ATQGVARLTV NRTNLHIYAT VISDDGTKVI ATASTAEAEV
RAALGGSGKG GNAAAATAIG KRIAEKAKAA GVEKVAFDRA GFAYHGRVKA LADAAREAGL
QF
|
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