| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5018 |
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| Symbol | |
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| ID | 7974136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5333423 |
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| End bp | 5335516 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795611 |
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| Product | PQQ-dependent dehydrogenase, methanol/ethanol family |
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| Protein accession | YP_002946886 |
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| Protein GI | 239817976 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.729726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGA TCCACTCCGG TTGGCTTGCG CTCGCCGGTG CATTGCTGTG CCTGGGCAGC
TCGCCCGCCG CGGCCCAGGC CTCGGCCGCC AAGCAGGTGA ACGGCGACTT CGTTCGCGCC
AATGCGGCCC AGAAGAAGAC GCCCGACTGG CCGAGCTACG GCCTGGACTA CGCCGAGTCG
CGCTTCAGCA AGCTCGACCA GGTGAATGCC GGCAACGTGA AGCAGCTGGG GCTGGCCTGG
TCCTACAACC TCGAATCCAC GCGCGGCGTC GAGGCCACGC CGCTGGTGGT GGACGGCGTC
ATGTACGTGA CCGCGTCGTG GAGCGTGGTG CATGCCATCG ACACGCGCAC CGGGCAGAAG
CTCTGGAGCT TCGATCCGCA GGTCGACAAG TCCAAGGGCT TCAGGGGCTG CTGCGACGTG
GTGAACCGCG GCGTGGCGCT GCACGAGGGC AAGGTCTACG TCGGCGCCTT CGACGGCCGC
CTGATCGCGC TCGACGCGGC CACGGGGCAG AAGGTCTGGG AGAAGAACAC CATCGAGGGG
CAGAAGGGCA GCTACACCAT CACCGGCGCG CCGCGCGTCT TCAAGGGCAA GGTCATCATC
GGCAACGGCG GCGCCGAGTA CGGCGTGCGC GGCTACGTCA CAGCCTACGA CGCGAAGACC
GGCGAGCAGA AGTGGCGCTG GTTCGTGGTG CCGGGCGATC CGGCCAAGCC CTTCGAGGAC
GAATCGATGG CGCGCGCCGC CAAGACCTGG GACCCTTCGG GCAAGTACTG GGAGGCCGGC
GGCGGCGGCA CCGCATGGGA CAGCTTCGCC TTCGACCCCG AGCTCAACCT GATGTACGTG
GGCACCGGCA ACGGCTCGCC CTGGGCGCAC AAGAAGCGCA GCCCCAAGGG CGGCGACAAC
CTCTACCTCG GCTCGGTGGT GGCCCTGAAC CCCGACACCG GCAAGTACGT GTGGCACTAC
CAGGAGACGC CGGGCGACAA CTGGGACTAC ACCTCCACCC AGTCGATGAT CCTGGCCAAC
GTCACGCTCG GCGGCAAGGC GCGCAAGGTG CTGCTGCATG CGCCGAAGAA CGGCTTCTTC
TTTGTCATCG ACCGCACCAA CGGCAAGTTC ATCTCGGCGA AGAATTTCGT CGACGTGAAC
TGGGCCACGG GCTACGACAA GAACGGCCGC CCCATCGAGA TCGCGGCCGC GCGCCAGAAC
GACAAGCCCG GCGACAGCAT CCCCGGCCCC TTCGGTGCGC ACAACTGGCA CCCGATGTCG
TTCAACCCGC AGACCGGCCT GGCCTACTTG CCGGCGCAGA ACATCCCGAT CAACCTGATG
GACGACAAGG ACTGGAAGTT CGACCAGAAC GCACCGGGCC GGCCGCACGC CGCACTCGGC
TGGAACACCG CCATGTTCGC CAACGCCGAG CCGCCCAAGA GCAAGCCCTT CGGCCGCCTC
GTCGCCTGGG ACCCGGTGGC GCAGAAGGAG GCCTGGGGCG TGGACTACGT CTCGCCCTGG
AACGGCGGCA CGCTCACCAC CGCCGGCAAC CTGGTGTTCC AGGGCACGGC CGACGGCCGC
CTGGTGGCCT ACAACGCGAA GACCGGCGAG AAGCTCTGGG AAACGGCCAC CGGCACCGGC
GTGGTGGCCG CGCCCACCAC CTACATGGTC GATGGCAAGC AGTACGTGTC GGTCGCGGTG
GGCTGGGGCG GCGTGTACGG CCTCGCGCAG CGCGCCACCG AGCGGCAGGG CCCGGGCACG
GTCTACACCT TTGCCGTGGG CGGCAGCGCG AAGATGCCCG AGTTCGTGCA GTACCGCATG
GACAAGCTGG TGCAGGGCGT GAAGTACGAC CCCGCCAAGG TCCAGGCCGG CACCATGCTC
TATGTGAGCA ACTGCGTGTT CTGCCACGGC GTGCCGGGCG TGGACCGCGG CGGCAACATC
CCGAACCTCG GCTACATGGA TGCGGCCTAC ATCGAGAACC TCGACAAGTT CATCCTCAAG
GGCCCGGCCA TGGCGCGCGG CATGCCCGAC TTCACGGGCA AGCTCTCGGG CGAGGACATC
GAGAGCATCA AGGCCTTCAT CCAGGGGACG GCCGACGCGA TCCGGCCGAA GTGA
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| Protein sequence | MKKIHSGWLA LAGALLCLGS SPAAAQASAA KQVNGDFVRA NAAQKKTPDW PSYGLDYAES
RFSKLDQVNA GNVKQLGLAW SYNLESTRGV EATPLVVDGV MYVTASWSVV HAIDTRTGQK
LWSFDPQVDK SKGFRGCCDV VNRGVALHEG KVYVGAFDGR LIALDAATGQ KVWEKNTIEG
QKGSYTITGA PRVFKGKVII GNGGAEYGVR GYVTAYDAKT GEQKWRWFVV PGDPAKPFED
ESMARAAKTW DPSGKYWEAG GGGTAWDSFA FDPELNLMYV GTGNGSPWAH KKRSPKGGDN
LYLGSVVALN PDTGKYVWHY QETPGDNWDY TSTQSMILAN VTLGGKARKV LLHAPKNGFF
FVIDRTNGKF ISAKNFVDVN WATGYDKNGR PIEIAAARQN DKPGDSIPGP FGAHNWHPMS
FNPQTGLAYL PAQNIPINLM DDKDWKFDQN APGRPHAALG WNTAMFANAE PPKSKPFGRL
VAWDPVAQKE AWGVDYVSPW NGGTLTTAGN LVFQGTADGR LVAYNAKTGE KLWETATGTG
VVAAPTTYMV DGKQYVSVAV GWGGVYGLAQ RATERQGPGT VYTFAVGGSA KMPEFVQYRM
DKLVQGVKYD PAKVQAGTML YVSNCVFCHG VPGVDRGGNI PNLGYMDAAY IENLDKFILK
GPAMARGMPD FTGKLSGEDI ESIKAFIQGT ADAIRPK
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