Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4973 |
Symbol | |
ID | 7974255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5285031 |
End bp | 5286182 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644795568 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_002946843 |
Protein GI | 239817933 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.367735 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAACC CCCAAGGCGC CCTCGCAGGC ATCCGCGTCC TCGACATCTC GCGCATCCTC GGCGGCCCCT ACTGCGGCCA GATCCTTGGC GACCACGGTG CCGACGTGCT CAAGGTCGAG CCGCCGCAGG GCGACGACAC GCGCACCTGG GGCCCGCCCT TCAAGGACGG CGTGGCCTCG TACTACCACG GCCTGAACCG CAACAAGCGC GTGCAGCATC TCGACTTTTC CACGGACGAA GGCCGCGAGG CACTGCTCGC GCTCGTGGCC GAAGCCGACG TGCTGATCGA GAATTTCAAG ACCGGCACCA TGGAGCGCTG GGGCATCGGC TACGAGGCGC TTTCCGCGCG CTTTCCACGC CTCGTCTGGT GCCGCGTCTC GGGCTTCGGC GCCGATGGCC CGCTGGGCGC GCTGCCCGGC TACGACGCCG CCGTGCAGGC CATGACCGGC ATCATGAGCA TCAACGGCGA AGCCGACGGC GGCCCGCTGC GCGTGGGCCT GCCGGTGGTC GACATGGTGA CCGGGCTCAA TGCGGTGATC GGCGTGCTGC TCGCGCTGCA GGAGCGCAAC CGCAGCGGCC GCGGGCAGTT CGTGGAGGCC GCGCTGTACG ACAGCGGGCT CTCGCTGCTG CATCCGCATG CGGCCAACTG GTTCATGGAT GGCACCGAGC CGCGCCGCAC CGGCAACGCG CATCCCAACA TCTATCCCTA CGACGCGCTG GCCACCGGCA CCGACCCGGT GTTCGTGGCG GTGGGCAACG ACCGCCAGTT CGCGAGCCTG TGCCGCTGCA TCGGCCTGCC CGCGCTGGCC GACGATCCGC TCTACCGCAC GGCCGGCGCG CGCTCGGTGC ACCGTGCGGG GCTCAAGCAG CAGCTGGAAG CGGCCATGGC GGCGTTCGAC GGCCGTGCGC TGGTCGAGCA GCTGATGGCC GCGGGCGTGC CGGCCGCACC GGTGCTGCCG GTGGATGCGG CGCTCGAGCA TCCGCACACG GCGCACCGCG AAATGGTGGT GGAAATGGAA GGCGGCTACC GCGGCATCGG CGCGCCGGTG AAGCTCAGCC GCACGCCGGC GAGCTACCGG CACGCGCCGC TCACGCCGGG CGAGCGCTTC CTGCCCGATG CCGCGGCCGG CACTGGCGCC AGCGGCTCAT AG
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Protein sequence | MTNPQGALAG IRVLDISRIL GGPYCGQILG DHGADVLKVE PPQGDDTRTW GPPFKDGVAS YYHGLNRNKR VQHLDFSTDE GREALLALVA EADVLIENFK TGTMERWGIG YEALSARFPR LVWCRVSGFG ADGPLGALPG YDAAVQAMTG IMSINGEADG GPLRVGLPVV DMVTGLNAVI GVLLALQERN RSGRGQFVEA ALYDSGLSLL HPHAANWFMD GTEPRRTGNA HPNIYPYDAL ATGTDPVFVA VGNDRQFASL CRCIGLPALA DDPLYRTAGA RSVHRAGLKQ QLEAAMAAFD GRALVEQLMA AGVPAAPVLP VDAALEHPHT AHREMVVEME GGYRGIGAPV KLSRTPASYR HAPLTPGERF LPDAAAGTGA SGS
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