| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4964 |
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| Symbol | |
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| ID | 7974246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5275660 |
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| End bp | 5276643 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795559 |
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| Product | ABC transporter related |
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| Protein accession | YP_002946834 |
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| Protein GI | 239817924 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA
[TIGR01288] ATP-binding ABC transporter family nodulation protein NodI |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.763895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCAG GCTTCGCGGG CCTGCGTCAG AATGGCCGCG TGCCCTCCTC TTCTTCCTCC
TCCGCCCCGC TCTTCCACGC CAGCCGCCTT TGCAAGCGCT ACGGCGGCAC CACGGTCGTG
GACGACCTGT CGTTCGAGAT CGCGCCCGGC GAATGCCTGG GCGTGATCGG CCCGAACGGC
GCCGGCAAGA CCACCACCAT CCGCATGTGC CTGGGCCTCA CCACGCCCGA CGGCGGCGAG
ATCCGCGCGC TGGGCCTGCA GATGCCGCGC GACGCGCTGG CCATCAAGGC GCAGCTCGGC
GTGGTGTCGC AGTTCGACAC GCTCGACCCC GACTTCAGCT GCGCCGAGAA CCTCGTGGTG
TACGGCCGCT ACTTCGGCTT CAGCAAGGCG CAGGTGCGCG AGCGCGTGCC GCAGCTGCTG
GAATTTGCGG CGCTCTCGCA CAAGGCCGAT GCCAAGCCGG GCGAGCTCTC GGGCGGCATG
CGCCGGCGCC TCTCGCTGGC GCGCGCGCTG GTGAACGACC CCAAGCTGCT GCTGCTCGAC
GAGCCCACCA CCGGGCTCGA TCCGCAGGCG CGCCACCTGA TGTGGGAGCG CCTGCAGGTG
CTGCTGCAGC AGGGCAAGTC GATCCTGCTG ACCACGCACT TCATGGACGA GGCCGAGCGC
CTGTGCTCGC GCCTGCTGGT GCTCGACCAC GGCCGCAAGA TCGCCGAGGG CCGACCGCGC
GACCTGATTG CCGAGCACCT GGAACCCGAC GTGGTCGAGG TGTATGGCAA CGGCGCGCTG
TCGCTGGCCG AGTCGCCGGA ACTGAAGGCG ATGGCAGCGC GCGTGGAAGT GAGCGGCGAG
ACCGTGTTCT TCTACACGCA GGACGCGCGC CGGCTGCTCG ATGCGCTCAC GCGGCACGGC
CGCCTGCGCA CCTTCCACCG GCCCGCGAAC CTCGAAGACC TTTTTCTCAA GCTCACGGGC
CGGCAGATCC GCGAGGATGG CTAG
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| Protein sequence | MAAGFAGLRQ NGRVPSSSSS SAPLFHASRL CKRYGGTTVV DDLSFEIAPG ECLGVIGPNG
AGKTTTIRMC LGLTTPDGGE IRALGLQMPR DALAIKAQLG VVSQFDTLDP DFSCAENLVV
YGRYFGFSKA QVRERVPQLL EFAALSHKAD AKPGELSGGM RRRLSLARAL VNDPKLLLLD
EPTTGLDPQA RHLMWERLQV LLQQGKSILL TTHFMDEAER LCSRLLVLDH GRKIAEGRPR
DLIAEHLEPD VVEVYGNGAL SLAESPELKA MAARVEVSGE TVFFYTQDAR RLLDALTRHG
RLRTFHRPAN LEDLFLKLTG RQIREDG
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