| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4859 |
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| Symbol | |
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| ID | 7971553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5177539 |
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| End bp | 5179194 |
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| Gene Length | 1656 bp |
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| Protein Length | 551 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795454 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002946729 |
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| Protein GI | 239817819 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.425556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGACT TCGCCGCGCT CTACCGCGAG CTCGACGCCA GCACCTCGAG CCTTGCCAAG
CAGGCCGCGC TGCAGCGCTA CCTGCGCGAG GCCGATCCGG CCGATGCCGC CTGGGCCGTG
TACTTCCTCG CCGGCGGCAA GCCGCGCCAG CTGGTGCCCA CCAAGCTGCT GCGGCTGCTC
GCGCAGGAGG CCGCGGGCCT GCCCGAATGG CTGTTCGACG AGAGCTACGA GGCGGTCGGC
GACCTGGCCG AAACCATCGC GCTGCTGCTG CCGCCGCCCA CCGAGGCGCA TGACCTCGGC
CTGGCGCGCT GGGTCGAGGA GCACCTGCTG CCGCTGCGCG AGGCCGGCAA GGCGGCGCCG
GACGAACTGC CCGCGCGGCT GCGCGCGCAG TGGCGCCAGC TCGCGGCCGA AGAGCGGCTG
GTGTACTTCA AGCTCATCAC CGGCGCCTTC CGCGTGGGCG TGTCGAAGCT GCAGGTCACC
CAGGCGCTCG CGGGCGTGGG CGGCATCGAT CCCAAGCGCG TGGCGCAGCG CCTCATGGGC
TACACCCACA TCGGCGGCCG GCCGCGCGCG GAAGACTACC GCGCGCTGAT CGCGCCGGAG
TCGGGCGCGG AGCAGGTGCA AAAAACCAGC GGGCAGCCCT ACCCGTTCTT TCTTGCGCAT
GCCTTCAACC TGCCGCTCGA ACAATTCGAT GCTGTGCTCG GCCCGCCGGC CGGCTGGATC
GTCGAATGGA AGTGGGACGG CATCCGCGCG CAGCTGGTCA AGCGCGCGGG CGCCAGCTGG
CTGTGGTCGC GCGGCGAGGA ACTGGTGACC GAGCGCTTTC CCGAGCTGGC CGTGCTGGGC
GATGCGCTGC CCGACGGCAC GGTGCTCGAC GGCGAGATTG CCGTCTGGCG CGACGACCGC
GTGCAGCCCT TCGCGGAGCT GCAGAAACGC ATCGGCCGCA AGACGCTGGG CGCGAAGCTG
CTGCGCGAGA TCCCGGTGGT GCTGCTGGCC TACGACATCC TCGAATGGGA AGGGCGCGAC
CTGCGCGCGC TGCCTCAATC GGAGCGCCGG CTCTTGCTCG ACGAACTCGT CACGCGCATG
CAGCACCCGT CGCTGCTGCC GAGCCCGATG CTCACCGGCA TCGCGTGGAG CGACTTCGCA
CGCCAGCGCG AAGCCGCGCG CAGCCTGGGC GTGGAGGGCA TGATGCTCAA GCGCCGCGAC
GCGCAGTACG GCGTGGGCCG CACCAAGGAC GTGGGCGTGT GGTGGAAGTG GAAGATCGAT
CCGCTCAGCA TCGACGCCGT GCTCGTCTAC GCGCAGCGCG GCCACGGCCG GCGCGCGAGC
CTCTACAGCG ACTACACCTT CGCCGTCTGG GATGGCCCGC CCGAACAGGG GGACCGCAAG
CTCGTGCCCT TTGCCAAGGC CTATTCGGGC CTGACCGACG CCGAGATGGC GCGCGTGGAC
GCGATCATCC GCAAGACCAC CGTCGAAAGC TTCGGCCCGG TGAAGAGCGT CAAGCCCACG
CTGGTGTTCG AGCTCGGCTT CGAAGGCATT GCGCGCAGCA CGCGCCACAA GAGCGGCATC
GCGGTGCGCT TTCCGCGCAT GCTGCGCTGG CGCGAGGACA AGCCGGTGGC GGAGGCCGAT
ACCTTGCAGA CGCTCGCCGC GTTGCTGCCG TCATGA
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| Protein sequence | MKDFAALYRE LDASTSSLAK QAALQRYLRE ADPADAAWAV YFLAGGKPRQ LVPTKLLRLL
AQEAAGLPEW LFDESYEAVG DLAETIALLL PPPTEAHDLG LARWVEEHLL PLREAGKAAP
DELPARLRAQ WRQLAAEERL VYFKLITGAF RVGVSKLQVT QALAGVGGID PKRVAQRLMG
YTHIGGRPRA EDYRALIAPE SGAEQVQKTS GQPYPFFLAH AFNLPLEQFD AVLGPPAGWI
VEWKWDGIRA QLVKRAGASW LWSRGEELVT ERFPELAVLG DALPDGTVLD GEIAVWRDDR
VQPFAELQKR IGRKTLGAKL LREIPVVLLA YDILEWEGRD LRALPQSERR LLLDELVTRM
QHPSLLPSPM LTGIAWSDFA RQREAARSLG VEGMMLKRRD AQYGVGRTKD VGVWWKWKID
PLSIDAVLVY AQRGHGRRAS LYSDYTFAVW DGPPEQGDRK LVPFAKAYSG LTDAEMARVD
AIIRKTTVES FGPVKSVKPT LVFELGFEGI ARSTRHKSGI AVRFPRMLRW REDKPVAEAD
TLQTLAALLP S
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