Gene Vapar_4834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4834 
Symbol 
ID7970305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5154740 
End bp5155348 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content69% 
IMG OID644795429 
Productcytochrome c class I 
Protein accessionYP_002946704 
Protein GI239817794 
COG category[C] Energy production and conversion 
COG ID[COG3245] Cytochrome c5 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.62683 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCAG ACCCGCACTA CCAGGCCACA GAAGACGCCC ACACCGGCCC GATCAAGAAC 
CCGAAGCAAC TGCTGCTGGC GGTATTTTTC TCCTTCGTAG CACCCATCCT GATCATCGTG 
GGCCTTGTGG CCTATGTGGT TTCGGGCAAC AAGCCCGCGG GCACGGCCGA GGGCGACAAC 
ATGTCGCTGT ACGGCGTGTC GCAGGATGCG CGCGACCGCG AAGTGGCCGA ACGGCTCAAG 
AAGGTCGGCG CCATCGAGAT CCGCGATGCC AACCGTCCGC TGGCAGCCGG CGAGGCCGTC 
TTCAAGGCGC AGTGCGCAGC CTGCCACGGC GCGCCCGGCA TTCCCGGCGC TCCGCACTAC 
GGCGACGCCG CAGCCTGGGG CCCGCGCATC GGCCAGGGCT ACGAAACGCT GCTCGATCAT 
GCGCTGCATG GCAAGGGCGC GATGCCGCCC CAGGGCGGCG GCGACTTCGA AGACCTCGAA 
ATCGGCCGTG CCGTGGTCTA CATGGCCAAT GCCGGCGGCG CCAAGTTCGC GGTGCCCGAC 
CGCCCCGCGG CGGCGGCGGC GCCTGCCGAT GGCGCGGCTT CGGCGCCCGC GGCGGCTGCC 
AGCAAGTAA
 
Protein sequence
MSADPHYQAT EDAHTGPIKN PKQLLLAVFF SFVAPILIIV GLVAYVVSGN KPAGTAEGDN 
MSLYGVSQDA RDREVAERLK KVGAIEIRDA NRPLAAGEAV FKAQCAACHG APGIPGAPHY 
GDAAAWGPRI GQGYETLLDH ALHGKGAMPP QGGGDFEDLE IGRAVVYMAN AGGAKFAVPD 
RPAAAAAPAD GAASAPAAAA SK