| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4833 |
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| Symbol | |
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| ID | 7970304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5153200 |
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| End bp | 5154624 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795428 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002946703 |
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| Protein GI | 239817793 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.820871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAAGA AACTGATTCC CACAGCCTTG GCCGCGGCAA TGCTGCTGGC CGGCTGCTCG
CTGATTCCGA CCTACGAACG CCCGGCGGCG CCGGTGCCCA CCACCTTCCC GGGCGACCCG
GCGCAGCCGG CCGGCCAGGC TGCGGCCGCG GTGCCCTGGG AAGAGTTCTT CACCGATTCG
CGGCTGAACG GGCTGATCCG CACCGCGCTG GAAAACAACC GCGACCTGCG CGTGTCGGTG
CTCAACATCG AGCAGGCGCG CGCGCAGTTC CAGATCGAGC GCGCGGCGCT GTTCCCGGCG
CTGGGCCTCA CGGGCAGCGG CTCGCGCTCG AGCCCCAACC CCTACCAGGC GTTCGACAGC
AGCGCGGGCA GCGTGTCGTC GCAGTACAGC GTGAACCTGG GCGTGACCGC CTGGGAGATC
GACTTCTTCG GCCGCATCCG CGCGCTGAAG GACCAGGCGC TGGCGCAGTA CCTGGCCACC
GAGGAATCGC GCAAGGCCGC GCAGGTGAGC CTGATCGCGG CGGTGGCCAC CGGCTGGCTC
ACGCTGATTG CCGACGACGA GCTGCTCGAG CTCACGCGCC AGACCTTGGT GACGCGCGAA
GAGTCGGTGC GGCTGACCAA GATGCGCTTC GACAACGGCG TGTCGTCCGA GCTCGACTTC
CAGGCCGCGA ACTCGCTGGC CGAGACCGCG CGCGCCTCGT ACGCGCAGCA GCAGCGCACG
CGCATGCAGG ACGAGAACGC GCTCGCCCTG CTGCTGGGCG CGCCGGTTCC GGCCGATGCC
ACCGCGGGCG GCATCAAGGG GCTGGACAGC GTCAAGCCGA TGCCCGACGT GCCGGCGGGC
CTGCCCTCCG ACCTGCTGGC CGAGCGGCCC GACATCCGCG CCGCCGAGCA GCAGCTGATT
GCGGCCAACG CCAACATCGG CGCGGCGCGC GCCAACTTCT TCCCGCGCGT GTCGCTGACC
ACCACGCTGG GCACCGCGAG CAGCGAGTTC TCGGGCCTGT TCGACCGCGG CTCCAGGGCC
TGGTCGTTCG CGCCCTCGGT CACGCTGCCG ATCTTCGATG CGGGCCGCAA CCGGGCCACG
CTCGATTCGG CCAAGGCCGG GCGCGAGATT GCCGTGGCGC AGTACGAGAA GTCGATCCAG
ACCGCGTTCC GCGAAGTGGC CGACGCGCTG GCCGGGCGCG CCACGCTGGG CGAGCAGGTG
CGTGCGCAGC GCGCGCAGGC CGATGCCGAG GCGGTGCGCT TCAGGCTCTC GGACATGCGC
TACCGCAACG GCATTGCCAG CGCGCTGGAC CTGCTCGATG CGCAGCGCTC GCTGTACACG
GCGCAGCAGT CGGCGGTCAC CACGCGCCTC TTGCAGCTGC AGAACCAGGT CACGCTCTAC
AAGACATTGG GCGGCGGCTG GGCCACGCCC GGCAGCAAGG GCTGA
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| Protein sequence | MTKKLIPTAL AAAMLLAGCS LIPTYERPAA PVPTTFPGDP AQPAGQAAAA VPWEEFFTDS
RLNGLIRTAL ENNRDLRVSV LNIEQARAQF QIERAALFPA LGLTGSGSRS SPNPYQAFDS
SAGSVSSQYS VNLGVTAWEI DFFGRIRALK DQALAQYLAT EESRKAAQVS LIAAVATGWL
TLIADDELLE LTRQTLVTRE ESVRLTKMRF DNGVSSELDF QAANSLAETA RASYAQQQRT
RMQDENALAL LLGAPVPADA TAGGIKGLDS VKPMPDVPAG LPSDLLAERP DIRAAEQQLI
AANANIGAAR ANFFPRVSLT TTLGTASSEF SGLFDRGSRA WSFAPSVTLP IFDAGRNRAT
LDSAKAGREI AVAQYEKSIQ TAFREVADAL AGRATLGEQV RAQRAQADAE AVRFRLSDMR
YRNGIASALD LLDAQRSLYT AQQSAVTTRL LQLQNQVTLY KTLGGGWATP GSKG
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