| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4814 |
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| Symbol | |
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| ID | 7970284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5133126 |
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| End bp | 5134262 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795409 |
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| Product | twitching motility protein |
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| Protein accession | YP_002946685 |
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| Protein GI | 239817775 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACGCG ATCAAGCCAG CCAGTTCATC AACGACCTGC TCAAGCTCAT GGTGAGCCGC
AACGGCAGCG ACTTGTTCAT CACCGCGGAC TTTCCGCCCG CGATCAAGGT CGACGGCAAG
GTCACCAAGG TGTCGCAGCA GGCGCTGGGG GCGCAGCACA CGCTGGCGCT CACGCGCTCG
GTCATGAACG ACCGCCAGAC GGCGGAGTTC GAGCGCACCA AGGAATGCAA CTTCGCGATC
TCGCCGACCG GCATCGGCCG CTTCCGCGTG AACGCCTTCG TGCAGCAGGG CAAGGTCGGC
ATGGTGCTGC GGACCATTCC GGCCAAGCTG CCGACCATCG ACGGGCTGGG CATGCCGCAG
ATCCTGAAGG ACGTGTCGAT GACCAAGCGC GGCCTCACCA TCCTGGTGGG CGCCACGGGC
TCGGGCAAGT CGACCACGCT GGCCGCCATG ATCGACTGGC GCAACGAAAA TTCCTACGGC
CACATCGTGA CGGTGGAGGA CCCGGTCGAA TTCGTGCATC CGCACAAGAA CTGCGTGGTC
ACGCAGCGCG AAGTGGGCAT CGACACCGAC AGCTGGGAAG CCGCGCTCAA GAACACGCTG
CGCCAGGCGC CCGACGTGAT CCTGATGGGC GAAATCCGCG ACCGCGAGAC CATGGAGCAC
GCCGTGGCCT TTGCCGAGAC CGGCCACCTG TGCATGGCCA CGCTGCACGC CAACAGCGCC
AACCAGGCGC TGGACCGGAT CATCAACTTC TTCCCCGAAG AGCGTCGCGC GCAACTGTTG
ATGGACCTGT CGCTGAACCT GCGCTCGCTG ATCTCCCAGC GCCTGGTGCC CACCGAGGAC
GGCCAGGGCC GCGTGGCGGC GGTGGAAGTG CTGCTGAACA CGCCGCTCAT TTCCGACCTG
ATCTTCAAGG GCGAGGTGGG CGAGATCAAG GAGATCATGC GCAAAAGCCG CAACCTCGGC
ATGCAGACCT TCGACCAGGC GCTGTTCGAC CTGTTCGAAA GCCACTCGAT CACCTTCGAG
GACGCCATCC GCAACGCCGA TTCGGCCAAC GACCTGCGGC TGCAGATCAA GCTCAACAGC
CAGCGCGCGC GCAGCACCGA CCTCTCGGCC GGCACCGAGC ACTTCGCGAT CGTGTAG
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| Protein sequence | MERDQASQFI NDLLKLMVSR NGSDLFITAD FPPAIKVDGK VTKVSQQALG AQHTLALTRS
VMNDRQTAEF ERTKECNFAI SPTGIGRFRV NAFVQQGKVG MVLRTIPAKL PTIDGLGMPQ
ILKDVSMTKR GLTILVGATG SGKSTTLAAM IDWRNENSYG HIVTVEDPVE FVHPHKNCVV
TQREVGIDTD SWEAALKNTL RQAPDVILMG EIRDRETMEH AVAFAETGHL CMATLHANSA
NQALDRIINF FPEERRAQLL MDLSLNLRSL ISQRLVPTED GQGRVAAVEV LLNTPLISDL
IFKGEVGEIK EIMRKSRNLG MQTFDQALFD LFESHSITFE DAIRNADSAN DLRLQIKLNS
QRARSTDLSA GTEHFAIV
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