| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4771 |
|---|
| Symbol | |
|---|
| ID | 7970241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5081056 |
|---|
| End bp | 5082963 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795366 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002946642 |
|---|
| Protein GI | 239817732 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTCA TCACACTCCT CAACGCCCAA CTCGCGTTCG GTCACGTCCC GCTGCTCGAT
CATGCGGACT TCTCTCTTCT CGAATCGGAG CGTATCGGCC TGATCGGGCG CAATGGTGCC
GGCAAGTCTT CGCTGCTCAA GATACTGGGT GGCCTGGAGA AAACGGACGA CGGCACGCTC
CAACTGCAGC AGAACCTGCG CATCGCATTC GTCGCCCAGG AACCCCAGCT GGACATGGAC
GCAGACGTAT TCACGGCCGC GAGCCAGGGG CTGGCCCCGG TCATCGCCAT ACGGGACCTC
TATCTTTCAG GTGCGGAGGG CCTGGACCTG GACGCGCTGC AGTCCCAGAT CGAAGCTTTC
GACGCCTGGA ACTGGGAGCA GCGCGTGGAA GAAACGCTGC ATCGGCTTCA CCTGGACCGC
AACGCCCGGA TCGGCTCTCT CTCCGGCGGC ACCCGCAAGC GGGTCGCGCT GGCCCAGGCG
CTGGTCGCCG CGCCGGATGT TCTTCTATTG GACGAACCCA CCAACCACCT GGATCTGGAC
TCCATCGAAT GGCTGGAGCA ATTGCTGATC GACTTCAAGG GAAGCGTCGT CACCGTCACC
CATGACCGCA GCTTCCTCAA CCGCGTGGCC ACCCGCATCG TGGAGCTGGA CCGGGGCAAG
CTGAATTCCT ACCCGGGCAA TTTCGAGCAG TACCTGCTGC AGAAGGAAGA ACAGCTCGCC
CAGGAAGCGG TCATCAGCGC CAAGGCGGAC AAGCTCCTCG CACAGGAAGA AATCTGGATC
CGCAAGGGCG TGGAGGCGCG CCGCACCCGC AGCCAGAGCC GCATCAGCCG CCTGGAAGCC
CTGCGCGCAA GCCGCGCGGC GCGCCGGGAA GTGCAAGGCA GCGTCAACAT GGACGTGGCC
TCGGGCCAGA GCAGCGGCAA GATCGTGGCC GAGCTCACCG AGGCGACCAA GTCCTTCGGC
GAAAAGACCG TGATCCGCAA GTTCACCGGC ACCATCCTGC GCGGCGACAA GGTCGGCCTG
CTGGGCCCGA ACGGGGCGGG CAAGACCACG CTGCTCAAGC TGATCCTGGG CGAGCTCGAG
CCCGACAGCG GCAAGATCCG CCGCGGCACC AACCTGCAGG TGGCGTATTT CGACCAGATG
CGCGACAAGC TCGACCTGGA CGCGACGCTG GAGGACTTCA TCAGCCCGGG CAGCGAGTGG
ATCGAGATCG GCAGCCAGCG CAAGCACGTG AAGAGCTACC TTTCGGACTT TCTCTTCTCC
CCCGCGCGTG CCAATTCGCC GGTGCGCTCC CTGAGCGGCG GCGAGCGCAA CCGGCTGCTG
CTGGCGCGCC TGTTCGCGCG CCCGGCCAAC GTGCTGGTGC TCGACGAACC GACCAACGAC
CTGGACATCG ACACGCTGGA ACTGCTGGAA GGCCTGCTGC AGGACTACGA CGGCACCGTG
TTCCTGGTCA GCCACGACCG CACCTTCCTG GACAACGTAG TGACCAGCAC GATCGCCTTC
GAGGGCGACG GCCACTGGCG CGAATACGAG GGCAGCGTGC AGGACTGGCT GATCCAGTCG
AAGCGCGCGC GCGAGATCGC GGAGCAGCGG CAGGCCGCCG GCGCCCCGCC TGCCCCGCCG
CCCGCACCGG CTCCCGCCGC CGCCGAACCG GCGCCCGCGC GTCCGGCCGG CGCCGCCCGC
AAGAAGCTCA GCTACAAGGA ACAGCGCGAA CTCGAGGCGC TCCCGGCGCT GATCGAGGCG
CTCGAGGCCG AGCAGAAGCG CATCGGCGAA ATGCTCGAGC TCGACGGCGG CGCGATCTAC
GCCAGCGACG CTTCGCGCGC GGCCGAGTTG AGCCAGCGCC ACGCCCAGAT CGACGACGAA
CTGCTGGCGG CGCTGGAACG CCAGGAAGAG CTGTCCGCCG GGCGCTAG
|
|---|
| Protein sequence | MALITLLNAQ LAFGHVPLLD HADFSLLESE RIGLIGRNGA GKSSLLKILG GLEKTDDGTL
QLQQNLRIAF VAQEPQLDMD ADVFTAASQG LAPVIAIRDL YLSGAEGLDL DALQSQIEAF
DAWNWEQRVE ETLHRLHLDR NARIGSLSGG TRKRVALAQA LVAAPDVLLL DEPTNHLDLD
SIEWLEQLLI DFKGSVVTVT HDRSFLNRVA TRIVELDRGK LNSYPGNFEQ YLLQKEEQLA
QEAVISAKAD KLLAQEEIWI RKGVEARRTR SQSRISRLEA LRASRAARRE VQGSVNMDVA
SGQSSGKIVA ELTEATKSFG EKTVIRKFTG TILRGDKVGL LGPNGAGKTT LLKLILGELE
PDSGKIRRGT NLQVAYFDQM RDKLDLDATL EDFISPGSEW IEIGSQRKHV KSYLSDFLFS
PARANSPVRS LSGGERNRLL LARLFARPAN VLVLDEPTND LDIDTLELLE GLLQDYDGTV
FLVSHDRTFL DNVVTSTIAF EGDGHWREYE GSVQDWLIQS KRAREIAEQR QAAGAPPAPP
PAPAPAAAEP APARPAGAAR KKLSYKEQRE LEALPALIEA LEAEQKRIGE MLELDGGAIY
ASDASRAAEL SQRHAQIDDE LLAALERQEE LSAGR
|
|---|
| |