Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4753 |
Symbol | |
ID | 7971763 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5051184 |
End bp | 5052407 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 644795338 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002946624 |
Protein GI | 239817714 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.84562 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTCCA TTCAAAATAT GCATGCATCG GCTGGCGCCG CGCCGGAGGG GCGCAGCCTG CCGGGATCGC TGGTGCTGCT GCTGGCCACG GGTGCGGGCC TGTCGGTGGC GTCGCTCTAC TACGCCCAGC CGATGCTCGG CGTGCTGGGC GCGGACATCG GCGCCTCGCC CCGCTCGGTG GGGCTCATTC CCACGCTCAC GCAGCTGGGC TACGCACTCG GCATCCTGCT GCTGGCGCCG CTGGGCGACC GCTTCGACCG GCGCCGCATC GTGCTGGCCA AGGCGGCCGC GCTGTGCGCC GCGCTGCTGG TGGCCGGCGC CGCGCCGTCG ATCGGCGTGC TGCTCGCGGC CAGCCTGGCG ATCGGCCTGG CGGCCACCAT GGCGCAGGAC ATCGTGCCCG CGGCCGCCAC GCTGGCACCC GAGGCCTCGC GCGGCAAGAC GGTGGGCACG GTGATGACCG GGCTGCTGCT GGGCATCCTG CTGTCGCGCG TGGTGAGCGG TTTCGTGGCC GAGCACTTCG GCTGGCGCGC GATGTTCATC GCGGCCGCGG CCAGCATCGC GCTGATCGGC GCGGCCGCCT GGCGCGGGCT GCCGCGCTTC CGGCCCACCA CGCACCTGGC CTACGCCGCG CTGCTCGGCT CCCTGGGCAC GCTGTGGTCG CGCCACGGCA TGCTGCGCCG CGCCGCGCTG GCCCAGGCGC TGCTGGCGGT GGGATTCAGC GCGTTCTGGT CGACGCTGGC CGTGATGCTG CATGGCGCCC CCTTCCACCT GGGCAGCGCG GCGGCGGGCG CCTTCGGCCT GGCCGGCGCG GCCGGCGCGC TGGCGGCGCC GCTGGCCGGC CGGCTGGCCG ACCGCCGCGG GCCCGAGCTG GTGACGCGGC TGGGCGCCGG GCTGGCGGTG CTGTCGTTCG CGGCCATGGG CCTGGCACCG CTGATGGCGC CGCAGGCGCA GCTCTGGCTG CTGGCGCTGG CCGCGGTCGG CTTCGACCTG GGCATGCAGG CGGCGCTGAT CGCGCACCAG ACCATCGTCT ACGGCATCGA GCCCGGTGCG CGCAGCCGGC TCAACGCGGT GCTGTTCACC AGCATGTTCA TCGGCATGGC GGCCGGCTCG GCGCTGGGTG CGCTGGCGCT CGCGCAGTGG GGCTGGGCCG GCGTGACCGG GCTGGCGACC GCCACGGCCG CCGCGGCGCT GGCGGTGCGG CTCTGGCCGC GCAAGGCCAG GTAG
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Protein sequence | MSSIQNMHAS AGAAPEGRSL PGSLVLLLAT GAGLSVASLY YAQPMLGVLG ADIGASPRSV GLIPTLTQLG YALGILLLAP LGDRFDRRRI VLAKAAALCA ALLVAGAAPS IGVLLAASLA IGLAATMAQD IVPAAATLAP EASRGKTVGT VMTGLLLGIL LSRVVSGFVA EHFGWRAMFI AAAASIALIG AAAWRGLPRF RPTTHLAYAA LLGSLGTLWS RHGMLRRAAL AQALLAVGFS AFWSTLAVML HGAPFHLGSA AAGAFGLAGA AGALAAPLAG RLADRRGPEL VTRLGAGLAV LSFAAMGLAP LMAPQAQLWL LALAAVGFDL GMQAALIAHQ TIVYGIEPGA RSRLNAVLFT SMFIGMAAGS ALGALALAQW GWAGVTGLAT ATAAAALAVR LWPRKAR
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