Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4740 |
Symbol | |
ID | 7971750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5038066 |
End bp | 5039022 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644795325 |
Product | protein of unknown function DUF45 |
Protein accession | YP_002946611 |
Protein GI | 239817701 |
COG category | [R] General function prediction only |
COG ID | [COG1451] Predicted metal-dependent hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.677282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCTGT TCGAAGGGTT GGGCAGCGAG TTTGCGCCGG CCAAGCCGAG CGAGCCGCGC GGCAAGAAGG TCCGGAAAAA GGCGGCGCCG CCGGCCGTGC CCGCACCCCC GGTGGTCGAT GCGCAGCCTG CAGGCAGGGC CGGGGACGCC GGTCCCGCGC AGCCCGCCGT CCCGCTGCGC GACACGCTCG CGCTCGCAAG CTTCGTGCAC CCTGAGGCCA CGCGCGAAGC GGTGCTGGGA TCGGCGCGCG TGGCCTACGA GTTCAAGCGC GGCAAGCGCA AGACCATCGG CTTCGTGGTG GGCGCCGAAG GCCTGTCGGT GCGCGCGCCG CGCTGGGTCA CGCTGCGCGA CGTCGATGCC GCCATCCAGG AAAAGGCCGG CTGGATCCTG CGCAAGCTGC TGGAGACGCA GCAGCGCCAC GCACGCGTCG AGGCCACGCG CATCGACTGG AAGGACGGCG CGGAGTTTCC CTTCATGGGC GAGACGGTCG TGATCCGCCT CGATCCGAAG CACGGCTTTG CAAGCGTCGG CGGCACGCTC GATGCAAGCG ATGACGCCGC CGGCCCGCGC ACTTTGCGCC TGGCCGTGGC GCAGAACGCC GAGGCCTCGC AGATCCGCGA TGCCGCCCAA GCCTGGCTCA TGCGGCAGGC GCGCCGGCTG TTCATCGAGC GGCTCGACCA TTTCGCGCCC CGGCTCGGGG TGCGGTGGCA GAAGCTGTCG CTGTCGAATG CCGCGACTCG CTGGGGAAGC GCGAGCGCGG ATGGGTCGAT CCGGCTGAAC TGGCGGCTGA TCCACTTTCG CCTGCCGGTG ATCGACTATG TGGTGGCGCA CGAGCTGGCG CACCTGCGGG TGATGGACCA CTCGCAGCGG TTCTGGGATA CGGTGGAGAG CGTGGTGCCG GACTATGACC TGCTGCGGCG GCAGCTCAAG GATGAGGCTG TGCCTAGGTG GTCTTGA
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Protein sequence | MDLFEGLGSE FAPAKPSEPR GKKVRKKAAP PAVPAPPVVD AQPAGRAGDA GPAQPAVPLR DTLALASFVH PEATREAVLG SARVAYEFKR GKRKTIGFVV GAEGLSVRAP RWVTLRDVDA AIQEKAGWIL RKLLETQQRH ARVEATRIDW KDGAEFPFMG ETVVIRLDPK HGFASVGGTL DASDDAAGPR TLRLAVAQNA EASQIRDAAQ AWLMRQARRL FIERLDHFAP RLGVRWQKLS LSNAATRWGS ASADGSIRLN WRLIHFRLPV IDYVVAHELA HLRVMDHSQR FWDTVESVVP DYDLLRRQLK DEAVPRWS
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