| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4717 |
|---|
| Symbol | |
|---|
| ID | 7971727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5011355 |
|---|
| End bp | 5012275 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795302 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_002946588 |
|---|
| Protein GI | 239817678 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA TCGTTTCCCT GACCGACAAC CGCCCCGAAC CCTGGATCGA AGGCCTCAGG
GCCGAGCTGC CCGATGCGCA GATCGAAACC TGGAAGCCGG GTGCCCCCCA GGCCGACCAC
GCGGTGGTGT GGGCGCCGCC CCAGCAGCTG CTCGACGAGC AGCCCGGGCT GCGCGGCCTG
TTCAACATCG GCGCGGGTGT CGATGCGCTG CTCAAGCTGA AAGTCCCGCC GCAGACGCGC
ATCGTGCGGC TCGACGATGC CGGCATGTCG GTGCAGATGG CCGAGTACGT GTGCCACACG
CTGATCCGGC ACTTCCGCGA GTTCGATGTC TACGAGGCCG ATGCGCGCGA AGGCCGCTGG
AGCTACCGCA AGCCGCGGCT GCGTCGCGAT TTTCCGGTCG GCATCATGGG CCTGGGCGTG
CTCGGCGAGC GCGTGGCCAG GGCCGTGGCG CAGTTCGAGT TTCCGATGCT GGGCTGGAGC
CGTTCGCCCA AAGCCATCGA GGGCGTGCAG GTGTTCAGCG GCGAGGGGCA GTTGGGCGAG
TTCCTGTCGT CCACGCGCGT GCTGGTCAAC CTGCTGCCGC TGACCGAGGC CACGCGCGGC
ATCCTCAACC GCGAGACGCT CGGCAAGCTG CGGCCGGGCG GCTATCTCAT CAACATCGCG
CGCGGCGCGC ACCTGGTGGA AGACGACCTG ATCCCGATGC TCGATGCGGG CCAACTGGCC
GGCGCCACGC TCGACGTGTT CCAGGTCGAG CCGCTGCCCG CCGACCACGC CTTCTGGCGC
CACCCGAAGA TCACCGTCAC GCCGCACGGC TCGGCGCGCA CGCTGCGCGA GGAGTCCATC
GCGCAGATCG CCGGAAAGAT CCGCGCGATG GAGCAAGGCC TGCCGGTCAG CGGCGTGGTC
GATCCGGTCC GGGGCTACTG A
|
|---|
| Protein sequence | MKIIVSLTDN RPEPWIEGLR AELPDAQIET WKPGAPQADH AVVWAPPQQL LDEQPGLRGL
FNIGAGVDAL LKLKVPPQTR IVRLDDAGMS VQMAEYVCHT LIRHFREFDV YEADAREGRW
SYRKPRLRRD FPVGIMGLGV LGERVARAVA QFEFPMLGWS RSPKAIEGVQ VFSGEGQLGE
FLSSTRVLVN LLPLTEATRG ILNRETLGKL RPGGYLINIA RGAHLVEDDL IPMLDAGQLA
GATLDVFQVE PLPADHAFWR HPKITVTPHG SARTLREESI AQIAGKIRAM EQGLPVSGVV
DPVRGY
|
|---|
| |