Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4639 |
Symbol | |
ID | 7972849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4929727 |
End bp | 4930800 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644795223 |
Product | transcriptional regulator, LacI family |
Protein accession | YP_002946510 |
Protein GI | 239817600 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.496087 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACCA TCAAGGACGT CGCGCTGCGC GCGGGCGTTT CGGTCACCAC CGTCTCGCAC GTGGTCAACG ACACGCGTCA TGTGAGCGCC AAGGGCCGCG AGCGCGTGGA AGAGGCCATC CGCGAGCTGG GCTACGTGCC CAACGCGATG GCGCGCAGCC TCAAGAGCAA CACCACCTCG ACGCTCGGCA TGCTGATTCC GAACAGCTCG AACCCCTACT TTGCCGAGAT CGTGCGCATC GTCGAGGACC GCTGCTTCGG CGCCGGCTAC ACGCTGGTGC TGTGCAACAC GGACGACGAG CCGCGCCGCC AGAGCGTCTA CCTGCAGGTG CTGGCCGAGC GCCGCATCGA CGGGCTGATC GTGGTGTCGA CCGGCGCCGG CGACGACGAT TCGCTCGTCA CGCAGCTGCA CGGCCTGCGC ATTCCCACGG TGCTGGTCGA CCGCGAGATT GCCGACCCGG CCTGCGACCT GGTCGAAACC GCCCACATGC AGGGCGGGCT GCTCGCGGTG CGGCACCTGC TGTCGCTCGG CCACAAGCGC ATTGCCTGCA TCGGCGGGCC GGTAGGCGTG ATGCCGAGCG AGCAGCGCAT CGAGGGCTGG CGCATGGCGC TTGCCGAGGC CGGCACCGCG CCGAATGCCG ACGCCCTGCT GTGGCGCGGC GGCTTCACGA GCCAGGGCGG CTACGAGGCA ATGCACGCGA TCCTGCGCAC CGAAGAGGCG CCCTCGGCCG TCTTCGTCTG CAACGACCTG ATGGCCATCG GCGCCCTGCG CGCCGCGCAT GAAAGCGGCG TGCGCGTGCC CGACGAGCTC TCGATCGTGG GCTTCGACGA CATCGAACTC TCGGCCTACA CCAGCCCGCC GCTCACCACC GTGGCGCAGC CCAAGGAGCG CATCGGCGCG CTCGCGGTCG ACATGCTGCT GGAGCGCGTG GGCGGCAAGC GGCGCGATGC GCGCAAGGTG GTGCTGCAGC CCGAGCTGCG CGTGCGCGCC TCGACCGCGC GGCACGCGAG CTTCCGCGAG GCCGCCGCGC CGTCTTCCTC TTCCACGCCA AGCCGAAAGT CCCGCACCCC GTGA
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Protein sequence | MATIKDVALR AGVSVTTVSH VVNDTRHVSA KGRERVEEAI RELGYVPNAM ARSLKSNTTS TLGMLIPNSS NPYFAEIVRI VEDRCFGAGY TLVLCNTDDE PRRQSVYLQV LAERRIDGLI VVSTGAGDDD SLVTQLHGLR IPTVLVDREI ADPACDLVET AHMQGGLLAV RHLLSLGHKR IACIGGPVGV MPSEQRIEGW RMALAEAGTA PNADALLWRG GFTSQGGYEA MHAILRTEEA PSAVFVCNDL MAIGALRAAH ESGVRVPDEL SIVGFDDIEL SAYTSPPLTT VAQPKERIGA LAVDMLLERV GGKRRDARKV VLQPELRVRA STARHASFRE AAAPSSSSTP SRKSRTP
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