| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4636 |
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| Symbol | |
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| ID | 7972846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4926105 |
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| End bp | 4927061 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795220 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_002946507 |
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| Protein GI | 239817597 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTCA CCCGCCGCAC GCTGCAAAGC GCAGCCGCCC TGGCGCTGCT GGGCGCTTTC
GCCGCCTCGC CCGCCCTGGC CCAGGACAAG CCCAAGGTCG CGCTGGTCAT GAAGTCGCTG
GCCAACGAAT TCTTCCGCAC CATGGAAGAC GGCGCCAAGG CGCACCAGAA GGCGCATGCC
TCGGAGTACA CCCTGGTGGC CAACGGCATC AAGGACGAGA CCGACACGGC CGCCCAGATC
AAGATGGTCG AGCAGATGAT GGCGCAGAAG ATTAATGCGC TGGTCATCGC GCCGGCCGAT
TCGAAGGCAC TGGTGCCGGT GGTCAAGGCG GCCATCGACA AGGGCATTCT CGTGGTCAAC
ATCGACAACC AGTTCGACGC CGCCGCGCTG AAGGAAAAGG GCATCCAGGT GCCCTTCGTC
GGCCCCGACA ACCGCGCCGG CGCCAAGCTG GTGGGCGACG AGCTCGCCAA GAGCCTGAAG
GCCGGCGACA AGGTCGGCAT CATCGAAGGC GTGTCGACCA CCTTCAATGC GCAGCAGCGC
ACCCTCGGCT ACCAGGACGC CATGAAGGCC GCCGGCGCCA CGGTGGTGGG CGTGCAGTCG
GGCCAGTGGG AAATCGACAA GGGCAACACG GTGGCCGCCG GCATGATGCG CGAGCACCCC
GACCTGAAGG CGCTGCTCGC GGGCAACGAC AGCATGGCGC TGGGCGCCGT GGCGGCCGTC
AAGGCCGCGG GCAAGACCGG CAAGGTGCTG GTGGTGGGCT ACGACAACAT CGGCGCCATC
AAGCCGATGC TGAAGGACGG CCGCGTGCTT GCCACCGCTG ACCAGTTCGC GGCCAAGCAG
GCGGTGTTCG GCATCGAGAC CGCGCTCAAG GCGCTGGCCG AGAAGAAGCC GCAGTCGAGC
ATGCCGGCCG AAGTGAAGAC CGACGTGGTG CTGGTCACCA AGACTTCCGC AAAGTAA
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| Protein sequence | MKFTRRTLQS AAALALLGAF AASPALAQDK PKVALVMKSL ANEFFRTMED GAKAHQKAHA
SEYTLVANGI KDETDTAAQI KMVEQMMAQK INALVIAPAD SKALVPVVKA AIDKGILVVN
IDNQFDAAAL KEKGIQVPFV GPDNRAGAKL VGDELAKSLK AGDKVGIIEG VSTTFNAQQR
TLGYQDAMKA AGATVVGVQS GQWEIDKGNT VAAGMMREHP DLKALLAGND SMALGAVAAV
KAAGKTGKVL VVGYDNIGAI KPMLKDGRVL ATADQFAAKQ AVFGIETALK ALAEKKPQSS
MPAEVKTDVV LVTKTSAK
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