| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4620 |
|---|
| Symbol | |
|---|
| ID | 7972830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4904999 |
|---|
| End bp | 4906636 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644795204 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946491 |
|---|
| Protein GI | 239817581 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACATTC GATTCACCAG AGCGGCCGTT CCGTCGGCCT GCGCAGGCCT TCTGCTCGCG
CTGTCCGCCT GCGGCGGCGG AGGAGGTGGC GGCGGCGGCG GCGGCGGCTT TCCGCCGTTC
GGCCCCTCGG GCGGCGGCAA CCCGCCGTCG TCCCCATCGC CGGTCACGGT GTCGGGCAAG
GTGATGGTGC TCGGCCCGGT GAGCGGGGCG CTGGTCTGCG TGGACCGCAA CCGGAGCGGC
GCCTGCGACG AAGGCGAGCC CGCGGCCGCC AGCAAGACCG GCGAGGACGG CGCCTACAGC
TTCGCCTACA CGCCGGCCGA TGCGGCCGCC GCAGCCGAGC TTGCCGCCGC GCCGCTGCTG
GCGCAGGTGG ACGGCGGCAA TCCCTCGCTG CCATCGTTCT CCCAGCCTTT CACCATGAGC
GCGCCGGCCG GGCACCGCGG GCAGGTCAAT CCGCTGACCA CGCTGCTGCA GGCGGGCGTG
GCGGCGGGCC TGGCGCCCGA GCGGGCCGAG GCGCTGGTGC TGCTGCAGCT GGGCCTGCCC
GAGCTTGCCC AGCTGTACGA CTACCAGGCC GTGGCCGTGA CCGACCCCGG CCGCTTCGAG
GACAACGCCT TCACCGCCGC GCTGGTCACG GCCGATGCGC TGCACAGCGG CGTGGCCTTG
CGGCTGGTCG ATCCGGCGAC CGTCACGCCG GTGGCCTCGG ACCAGCTGGC GCGGCTGGAC
TTCGCGCGCG CCGACGACTA CCGCGCGCGG ACCTATCCGA CCGATGGCGT GCCCGACCCG
GCCACCGGCA AGCTGAAGCT CACCGACCGG CGCGAAGGCC TCACCAACGG CGCACCCACC
GCGCACGACA CGCTCTACGG CGTCGTGCAG CTGGGCGCCA ACGGCTGGGT GCGCTGCGAC
GAGAATGCGG GCTTCACCAG CACCCTTGGC ACGCCGAGCC GCAGCGACTA TTGCGGCGGC
ACCACGCGCA GCCTCGGCCA TGCCGCGGTC ACCGACATCT CCGGCCGCAA GATGGCCGAA
GTGGTGGCCG AGATGCAGGC GGCCGATGGC AACAGCATCT TCGGCGTGGT GCCGGCGACC
GCTTTCGCCA ACCCGGACGC CACCTTCCCG GCCGGCTCGC AGCTGCGCTA CCGGCGCGGC
GTGGACCTGG TGCAGCCCTA TTCGATCAAC CTGGCCAATC CGAGCGAGAC CACAAGCTTC
ACCACGCTGG AAGCGTTGAT CGCGGCCTTC CCGGCTTCGG GTGCCACCCT GCCGGCCGGA
ACCGGCACCA TCAGCCTGGG CGTGCTGAAT GAACAGCAGA CGCGGCTCTT GCGCGCGGCC
TTCACCGGCG CCGGCCCGGT GCAGTACTAC GCCTGCAACT TCGATTCCGC CACCAACGCC
TACGACACCT GCGCGGCCAC CGAGACCGGC ACGGTGGAGA TCCGCACCGA GGGCGGCGCG
CGCGTGCTGG CCTTCAACGG CGGCCATCCG CCGACCGACG TGGGGTCGCT GCGCACCTTC
GGCGAATACA GCGGCAAGGT CTATGTGGTG CGCACCACCA AGTCCGACGC CCGATACAAC
CTCAACAGCG CGCGCCGCCT CAACGGCGTG GCGTGGGAGG CGATGAAGCC TCAGCTGGGC
ATCGGGAGCG GTGTATGA
|
|---|
| Protein sequence | MHIRFTRAAV PSACAGLLLA LSACGGGGGG GGGGGGFPPF GPSGGGNPPS SPSPVTVSGK
VMVLGPVSGA LVCVDRNRSG ACDEGEPAAA SKTGEDGAYS FAYTPADAAA AAELAAAPLL
AQVDGGNPSL PSFSQPFTMS APAGHRGQVN PLTTLLQAGV AAGLAPERAE ALVLLQLGLP
ELAQLYDYQA VAVTDPGRFE DNAFTAALVT ADALHSGVAL RLVDPATVTP VASDQLARLD
FARADDYRAR TYPTDGVPDP ATGKLKLTDR REGLTNGAPT AHDTLYGVVQ LGANGWVRCD
ENAGFTSTLG TPSRSDYCGG TTRSLGHAAV TDISGRKMAE VVAEMQAADG NSIFGVVPAT
AFANPDATFP AGSQLRYRRG VDLVQPYSIN LANPSETTSF TTLEALIAAF PASGATLPAG
TGTISLGVLN EQQTRLLRAA FTGAGPVQYY ACNFDSATNA YDTCAATETG TVEIRTEGGA
RVLAFNGGHP PTDVGSLRTF GEYSGKVYVV RTTKSDARYN LNSARRLNGV AWEAMKPQLG
IGSGV
|
|---|
| |