| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4605 |
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| Symbol | |
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| ID | 7973303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4890021 |
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| End bp | 4890836 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795189 |
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| Product | two component transcriptional regulator, AraC family |
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| Protein accession | YP_002946476 |
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| Protein GI | 239817566 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTACT GGTTCCAATC TTCCGAGCCT GCGCACATCA TGGTCATCGA CGACAGCGTC
GAAGAGCTCC AGGTGCTGCT TGCCGCGCTG CGCGGCGCCG GCCATCGCAT CAGCCTTGAC
TTCGACGCGC TCGGAGGCTA CCGCCGCGCC GGGGTGCTGC AGCCGGACTT GATCCTGCTT
GATGTGCACT TGGGGGCCAC CAGCGGCTTC GAGGCGTGCC GGCTGCTGAA GGCGGACCCC
ACCACCGCGC ACATCCCGGT GATTTTTCTC ACCGCCGGTG CAACGCTCGA GGAGCGGCTG
ACCGGTCTGC GAGAGGGCGG CGTCGACTAC ATCCTCAAGC CCTTCGAACC CGAAGAGGTG
CTGGTGCGCA TCGCGGTCCA TCTCGCGCTC GCACGCCGCG GCGCGCAACC GCCCGACGGT
GCCGCCGAGG CGCCCGGCAG GCCGCCGGCG TCCGAAGAGG AAGCACCCCA TGACCTGGAC
CGCGTGATCG CCAGGGCTGC GCAGCGGCTC ATCGAGAGCG ACCTTGCGAA CATTCCACCG
CTGCCGGCGC TCGCCGCACG CGTGGGCACG CACGAGAAGC GGCTGACGCG GGCGTTCCGT
GCCCACACGG GGCGCACCGT GCTCGAGTTC GCGCGCGAGG AGCGGCTGTC GCGCGCGCAG
CGTCTGCTCG CCCAGACGCC GCTCAGCATC GAGGACGTGG CGCATGCAAT CGGGTTCTCG
GGTGCCCCGA ACTTCACGAC GGCGTTCAAG GAACGCTTCG GCAGCACGCC TGCGGCGTTT
CGGCGGCTGA GTCGCGACTG CGCGTGCGGC GCCTGA
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| Protein sequence | MSYWFQSSEP AHIMVIDDSV EELQVLLAAL RGAGHRISLD FDALGGYRRA GVLQPDLILL
DVHLGATSGF EACRLLKADP TTAHIPVIFL TAGATLEERL TGLREGGVDY ILKPFEPEEV
LVRIAVHLAL ARRGAQPPDG AAEAPGRPPA SEEEAPHDLD RVIARAAQRL IESDLANIPP
LPALAARVGT HEKRLTRAFR AHTGRTVLEF AREERLSRAQ RLLAQTPLSI EDVAHAIGFS
GAPNFTTAFK ERFGSTPAAF RRLSRDCACG A
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