| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4487 |
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| Symbol | |
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| ID | 7972775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4736084 |
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| End bp | 4737913 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795076 |
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| Product | putative oxalyl-CoA decarboxylase |
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| Protein accession | YP_002946364 |
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| Protein GI | 239817454 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | [TIGR03254] oxalyl-CoA decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCAG TAAGAACGGA CAAAGAGGCA TCCACCACCC TGGACGACGC CCTCAAGCCC
AAGAACAGGG CCAACGACGG CGATGCGGTC GTGGTGGCCC TCAAGCACCC TGCCGACGAG
GCATCGGCGG CGCACGAAAC GACCATCGAC GGCTTCCACC TGGTCATCGA TGCGCTCAAG
CTGAACGACA TCGACACCAT CTTCGGCCTG CCGGGCATTC CCATCACCGA CCTCACGCGC
ATGGCGCAGG CCGAGGGGCT GCGGGTCATC TCGTTCCGCC ATGAGCAGCA TGCGGGCAAC
GCCGCCGCCG CCGCCGGCTT CCTCACGCAG AAGCCCGGCA TCTGCCTGAC GGTGTCGGCC
CCCGGCTTCC TGAACGGCCT CACGGCGCTG GCCAATGCCA CCACCAACTG CTTCCCGATG
ATTCTCATCA GCGGCTCGAG CGAGCGCGAG ATCGTCGACC TGCAGCAGGG CGACTATGAA
GAGATGGACC AGCTCGCGAT CGCCAAGCCG CTGTGCAAGG CGGCCTTCCG CGTGCTGCAT
GCGCAGGACA TCGGCGTGGG CATCGCACGC GCCATCCGCG CGGCGCTGTC GGGCCGCCCG
GGCGGCGTGT ACCTCGACCT GCCGGCCAAG CTGTTCGCGC AGACCATGGA GGCCGAAGCC
GGCCGCCGCT CGCTCATCAA GGTGGTCGAT CCCGCGCCGC GCCAGATTCC CGCGCCCGAC
GCGGTCAAGC GTGCGCTCGA CCTGCTCAAG GGCGCCAAGA AGCCGCTGAT CCTGCTGGGC
AAGGGCGCGG CCTACGCGCA GGCCGATGCC GACATCCGCG CGCTGGTCGA GAAGACCGGC
ATTCCCTACC TGCCAATGTC GATGGCCAAG GGCCTTTTGC CCGACACGCA TGCGCAGTCG
GCCGCGGCCG CGCGCTCCTA CGTGCTGCAG GAAGCCGACG TGGTGATGCT GGTGGGCGCG
CGCCTGAACT GGCTGCTCTC GCACGGCAAG GGCAAGACCT GGGGCCAGGA CAAGGGCGCC
AAGCAGTTCA TCCAGATCGA CATCGCGCCG ACCGAGATCG ACAGCAACGT GGCCATTGCC
GCGCCGGTGA TCGGCGACAT CGGCTCCTGC GTGGCGGCGC TGCTCGCGGG CGTGGATGCC
AAGTGGGCCA AGCCGCCGGC CGAATGGACC GGCGCCATCG CCGAGCGCAA GGACAAGAAC
CTCTCGAAGA TGGCCGTGAC GCTGGCCGCG CGGCCGTCGC CGATGAACTT CCACAGCGCG
CTCAGCGTGA TCCGCGACCA GGTGAAGGCG CGGCCCGACG CCATCGTGGT GAACGAAGGC
GCCAACACGC TGGACTTCGC GCGCAGCATC GTCGACATGT ACGAGCCGCG CAAGCGCCTG
GACGTGGGCA CCTGGGGAAT CATGGGCATC GGCATGGGCT TTGCCGTGGC CGCCGCGGTG
GTCACCGACA AGCCGGTGAT CGCCATCGAG GGCGACAGCG CCTTCGGCTT CAGCGGCATG
GAGGTGGAGA CCATCTGCCG CTACAACCTG CCCATTTGCA TCGTCGTGTT CAACAACAAC
GGCGTCTATC GCGGCACCGA CGTGAACGCG AGCGGCACGC CCGACGTGGC GCCCACCGTG
TTCGTGAAGA ACGCGCGCTA CGACAAGCTG ATGGAAGCCT TCGGCGGCGT GGGCGTCAAT
GCCACCACCG CGGACGAATT GCAGAAGGCG CTGGCCGAAG CCGTGGCTTC GCGCCGTCCG
ACCCTCATCA ATGCCGTGAT CGACGAGACC GCCGGCACCG AAAGCGGCCG CATCACCAGT
CTGAACCCCA GCACGGCGAA GAAGAAGTAA
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| Protein sequence | MSSVRTDKEA STTLDDALKP KNRANDGDAV VVALKHPADE ASAAHETTID GFHLVIDALK
LNDIDTIFGL PGIPITDLTR MAQAEGLRVI SFRHEQHAGN AAAAAGFLTQ KPGICLTVSA
PGFLNGLTAL ANATTNCFPM ILISGSSERE IVDLQQGDYE EMDQLAIAKP LCKAAFRVLH
AQDIGVGIAR AIRAALSGRP GGVYLDLPAK LFAQTMEAEA GRRSLIKVVD PAPRQIPAPD
AVKRALDLLK GAKKPLILLG KGAAYAQADA DIRALVEKTG IPYLPMSMAK GLLPDTHAQS
AAAARSYVLQ EADVVMLVGA RLNWLLSHGK GKTWGQDKGA KQFIQIDIAP TEIDSNVAIA
APVIGDIGSC VAALLAGVDA KWAKPPAEWT GAIAERKDKN LSKMAVTLAA RPSPMNFHSA
LSVIRDQVKA RPDAIVVNEG ANTLDFARSI VDMYEPRKRL DVGTWGIMGI GMGFAVAAAV
VTDKPVIAIE GDSAFGFSGM EVETICRYNL PICIVVFNNN GVYRGTDVNA SGTPDVAPTV
FVKNARYDKL MEAFGGVGVN ATTADELQKA LAEAVASRRP TLINAVIDET AGTESGRITS
LNPSTAKKK
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