Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4481 |
Symbol | |
ID | 7972769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4730095 |
End bp | 4730994 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644795070 |
Product | succinyl-CoA synthetase subunit alpha |
Protein accession | YP_002946358 |
Protein GI | 239817448 |
COG category | [C] Energy production and conversion |
COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGATCC TCATCAACAA GCACACCCGC GTCATCACCC AGGGCATCAC GGGAAAGACC GGCCAGTTCC ACACCGCGAT GTGCCGTGAC TACGCCAACG GCCAGAAGTG CTTCGTCGCC GGCGTGAACC CCAACAAGGC GGGCAAGTCC TTCGACGGCA TTCCGGTGTT CGGCACCGTC AAGGAAGCCA AGGCCGAGAC CGGCGCCACC GTCTCCGTGA TCTACGTGCC GCCGCCGTTT GCCGCCGCGG CCATCGACGA GGCGGTGGAT GCGGGGCTCG ACCTCGTCGT GTGCATCACC GAAGGCATTC CGGTGCGCGA CATGATCCGC ACCCGCCATC GCATGGAAGG CAGCAAGACC CTGCTGCTCG GCCCCAACTG CCCGGGCCTC ATCACGCCCG AGGAAATCAA GATCGGGATC ATGCCCGGCC ACATCCACCA GAAGGGCCGC ATCGGCGTGG TCTCGCGCTC GGGCACCTTG ACCTACGAGG CCGCGAGCCA GCTCGCGAGC TTCGGCATCG GGCAGTCGAC CGTGGTGGGC ATCGGCGGCG ATCCGGTGGG CGGGCTGCGG CACATCGACG TGCTGAAGAT GTTCAACGAC GACCCGCGCA CCGACGCCGT GATCATGGTC GGCGAGATCG GCGGCAGCGA CGAAGAAACC TGCGCGCGCT GGATCAGCGA GCACATGCGA AAGCCGGTCG TCGGCTTCAT CGCCGGCGCC AGCGCGCCAC CGGGCAAGCG CATGGGCCAC GCGGGCGCCA TCGTCTCGGG CGGCAAGGGA ACGGCGCGGG AAAAACTGGC GGTGATGAAG GAATGCGGCA TCCACGTGAC CGACAACCCG GCCGAGATGG GAAAGCTGCT CGCGTCGCTG GTGATCCCCG ACTACCTGCC CTTCGACTGA
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Protein sequence | MSILINKHTR VITQGITGKT GQFHTAMCRD YANGQKCFVA GVNPNKAGKS FDGIPVFGTV KEAKAETGAT VSVIYVPPPF AAAAIDEAVD AGLDLVVCIT EGIPVRDMIR TRHRMEGSKT LLLGPNCPGL ITPEEIKIGI MPGHIHQKGR IGVVSRSGTL TYEAASQLAS FGIGQSTVVG IGGDPVGGLR HIDVLKMFND DPRTDAVIMV GEIGGSDEET CARWISEHMR KPVVGFIAGA SAPPGKRMGH AGAIVSGGKG TAREKLAVMK ECGIHVTDNP AEMGKLLASL VIPDYLPFD
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